Protein

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Genbank accession
XPK42784.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNEMFSQGGKGSTGILTNKQTIARHFGVKQSEVVYFSVGALLTGYKVIYDKASQRAYSLPADIGSGVTAVSLSPAGVLVHSAGNVDLGALAVAREEYVTLPGSFDTGVTVNTKNELVVFTDGKYRWDGALPKEVPAGSTPASTGGVVTGAWRPVGDLSLRPSLATANSGYLVDDSNIMVQTPASGVVRTQHLRNADYISVKDFGAIGDGVTDDSASFSAAISSLLARGGSIYVPAGVYNVKNANIVVNTTDFHGNRIGFYGDGPAISVLRTATASSSDVVMSVTANTESAINSVIAGVSFHDIGFEILNNTGTVFRLVNTAYAKFDNCYFRGGRLGFESAGSLSSSFINCKFTEAVNYGFYAHNGFSYPNQLSFFQCVFASNQVAGIYAIDPGGLRIYGGSIEGNGLSNTDMTFGGGIAIDTKPGAAGVTIPLVVSGTYFEFNKGLADIYIAHTNNFANISFSVDSCSFGQGGEFTTVDRVKVIHSTTSSLRGTVSNCNFHELSGFVPTASNKYINVSGSGAGYRSVVNVNNYYNSVASSPADQTVRNSVTSGFSEPRIEKYTAVTGSGIATATINFNAFSAPPAVSVIVSDGTPDSVFSTRLVALSATSCTIEVLKTTTAGGAWTPATSVALHVTAVGASK
Physico‐chemical
properties
protein length:642 AA
molecular weight: 66762,61930 Da
isoelectric point:6,07435
aromaticity:0,09813
hydropathy:0,10857

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–96
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR012334
DC_1953
STR
1–640
DC_1953
IPR040775
RBD
91–156
IPR040775 IPR011050
IPR024535
ENZ
197–289
IPR024535
XPK42784.1
1 642
Architecture
ATT
STR
ATT 1-165 | STR 166-640 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42784.1
1 642
Domain Start End Length (AA) Confidence
N-terminal 1 212 212 0,9891
Central domain 213 532 321 0,9881
C-terminal 533 642 109 0,9515
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-212
Central
213-532
C-terminal
533-642

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage RudolfBernhard_Bas96
[NCBI] 		3398430 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42784.1 [NCBI]
Genbank nucleotide accession
PQ850623.1 [NCBI]
CDS location
range 6001 -> 7929
strand +
CDS
ATGAACGAAATGTTCTCACAAGGTGGTAAAGGTTCAACTGGAATCTTAACCAACAAACAAACAATAGCCCGTCACTTTGGAGTTAAACAATCAGAGGTTGTTTACTTCTCAGTGGGTGCTCTACTTACTGGTTACAAAGTCATTTATGACAAAGCGTCACAGAGGGCTTACTCATTACCTGCTGATATTGGTTCTGGGGTTACTGCTGTAAGCCTTAGTCCTGCCGGAGTATTGGTACACTCTGCTGGTAATGTGGACTTAGGTGCACTAGCTGTTGCTCGTGAAGAATATGTAACCTTACCTGGCTCATTTGATACCGGTGTAACAGTTAATACTAAGAACGAACTGGTTGTTTTTACTGATGGTAAGTACCGTTGGGATGGTGCATTACCTAAAGAAGTACCTGCTGGTTCCACCCCCGCATCCACCGGTGGTGTGGTTACTGGCGCCTGGCGCCCTGTGGGGGACTTATCTCTACGGCCAAGCTTGGCAACGGCCAATAGTGGGTATCTTGTTGATGACTCAAACATTATGGTGCAGACACCGGCCAGTGGTGTCGTGCGGACGCAGCACCTAAGAAATGCAGACTATATCAGCGTAAAAGACTTCGGCGCTATTGGTGATGGCGTTACTGATGATTCGGCCTCTTTCAGCGCTGCGATTTCGTCGCTATTAGCTCGGGGGGGTTCAATATACGTGCCTGCCGGTGTCTATAATGTCAAGAACGCTAATATAGTGGTTAACACGACTGACTTTCACGGGAATAGAATTGGATTTTATGGTGATGGACCGGCGATATCCGTACTACGTACGGCAACTGCGTCTTCAAGTGATGTGGTTATGTCGGTAACAGCAAACACAGAATCAGCAATTAACTCAGTTATTGCTGGAGTTTCATTCCATGATATTGGGTTCGAAATACTTAACAACACTGGGACTGTTTTCCGCCTTGTCAACACTGCTTACGCCAAATTTGACAACTGTTATTTCAGAGGTGGGAGACTTGGATTTGAAAGCGCTGGATCGCTGAGTAGTTCATTCATAAACTGCAAGTTTACAGAGGCGGTTAACTACGGATTTTACGCTCACAACGGCTTCAGCTATCCAAATCAACTATCATTTTTCCAGTGCGTATTCGCTAGCAACCAAGTGGCTGGAATTTATGCAATTGACCCAGGCGGCCTACGTATTTACGGAGGAAGCATAGAAGGAAATGGGTTATCAAACACGGACATGACATTTGGTGGTGGCATCGCCATCGATACAAAACCAGGCGCCGCCGGCGTAACAATCCCGTTAGTGGTATCAGGAACATACTTTGAGTTCAATAAAGGGCTGGCCGACATATATATAGCTCACACGAATAACTTTGCAAACATTTCTTTCTCAGTTGATAGTTGCAGTTTTGGGCAAGGTGGGGAATTCACTACAGTAGACCGCGTAAAGGTTATTCATAGTACAACGTCTTCGCTTAGGGGTACGGTTTCAAACTGCAACTTCCATGAGTTATCCGGCTTTGTGCCAACTGCCAGCAACAAGTATATTAACGTCAGTGGTAGTGGCGCTGGTTATCGATCAGTTGTAAACGTTAACAACTATTACAACTCAGTAGCCTCTTCCCCAGCAGACCAAACAGTTCGTAACTCTGTTACCTCTGGATTCTCAGAGCCTCGCATAGAGAAGTATACCGCCGTTACTGGCTCCGGAATAGCAACCGCGACTATAAATTTCAATGCCTTTTCTGCGCCCCCGGCTGTTTCAGTTATTGTATCTGACGGGACACCCGACAGCGTTTTTTCAACTAGATTGGTGGCTTTGAGCGCAACAAGCTGTACCATAGAGGTCCTCAAAACAACAACCGCTGGTGGCGCTTGGACTCCAGCTACTTCAGTTGCACTTCACGTAACTGCGGTTGGCGCATCAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4e801c95bbf33abf7f0314d7cf43e30e29b29c26395af4bfd4096e9799e8c129
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7895
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank