Protein

View in Explore
Genbank accession
YP_010088470.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MAVTGPWVGSSAVVNTGQNWMGGAAQRLRMGIPFWMSNMIGRSVEIIHTLGADHNFNGQWFRDRCFEAGSAPIVFNITGDLVSYSKDVPLFFMYGDTPNEYVQLNIHGVTMYGRGGNGGSNSPGSAGGHCIQNDIGGRLRINNGGAIAGGGGGGGGGYYSPFSKMRLTFGGGGGRPFGAPGGSIDMQSGATAGTISAPGAGSVNGIYSGGGGGEVGSAGGRCNIRGQGSEYDGGAAGYAVIGSAPTWINVGAIYGPRV
Physico‐chemical
properties
protein length:258 AA
molecular weight: 25987,59880 Da
isoelectric point:8,47716
aromaticity:0,09690
hydropathy:-0,11240

Domains

Domains [InterPro]
IPR048291
ATT
1–40
IPR048291 IPR007932
DC_2135
STR
1–139
DC_2135
YP_010088470.1
1 258
Architecture
ATT
STR
RBD
ATT 1-40 | STR 41-139 | RBD 140-258
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010088470.1
1 258
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,8716
Central domain 13 211 200 0,8636
C-terminal 212 258 46 0,7474
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-211
C-terminal
212-258

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage phiE142
[NCBI] 		1777059 Uroviricota > Caudoviricetes > Pantevenvirales > Carettavirus > Carettavirus e142
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010088470.1 [NCBI]
Genbank nucleotide accession
NC_055709.1 [NCBI]
CDS location
range 3899 -> 4675
strand +
CDS
ATGGCAGTAACAGGACCGTGGGTAGGATCGTCTGCAGTAGTTAATACAGGACAAAATTGGATGGGCGGCGCGGCCCAACGATTAAGAATGGGCATTCCGTTCTGGATGAGTAATATGATAGGTCGATCTGTTGAAATAATTCACACGCTTGGAGCAGACCATAACTTCAATGGTCAATGGTTCCGAGATAGATGTTTTGAGGCAGGTAGTGCACCTATAGTGTTTAATATCACTGGAGATTTAGTATCATATTCTAAAGATGTTCCTTTATTCTTCATGTATGGAGATACACCGAATGAATATGTTCAGTTGAATATACACGGCGTAACGATGTATGGACGTGGCGGTAATGGCGGTAGCAATAGTCCTGGTTCAGCTGGAGGTCATTGTATTCAAAACGATATTGGTGGGAGACTAAGAATTAATAATGGTGGAGCTATTGCTGGAGGTGGCGGCGGTGGTGGCGGCGGATATTATTCTCCTTTTTCAAAAATGAGATTGACTTTTGGAGGTGGCGGCGGGCGTCCGTTTGGCGCACCGGGCGGATCTATTGATATGCAATCAGGAGCAACTGCTGGTACTATTTCTGCGCCTGGCGCAGGGTCTGTGAACGGTATCTATAGCGGCGGTGGCGGTGGCGAAGTTGGCTCCGCAGGAGGTAGATGTAATATTCGTGGTCAAGGATCTGAATACGATGGCGGAGCTGCTGGTTATGCCGTCATAGGGTCTGCTCCAACGTGGATAAATGTTGGAGCAATATATGGTCCAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b57e2eb1a633aa2a43f528aed63c032b2f177a8e39f26db068759957b56f7a4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome analysis of a novel virulent bacteriophage, phiE142, a potential biocontrol agent in the combat pathogenic bacteria in food chain Amarillas,L. and Leon-Felix,J. 2016-12-13 — GenBank