Protein

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UniProt accession
A0A7S5QZI3 [UniProt]
Protein name
Pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MVTRTIDDLPVASSEAIALGTLLLSDANGIEFRATTAVIGGVHLFFQDEDDLTPVVRGRLTSPGRTVENILVTLTATSNTTGLVVTKTTTTNDTGNWSYDFTTSLARNDTYTIEAKVAVYLTATTTKAIASLSTLNSPLVATSTAKVGDTIIVDEPDFSGSPSEIRYRYLRGPNYVIPGANASVYTLVADDDADIITPQVQAVNAGGDSQWFSANTIGPVSNKTSVLLTNPVIATDGTLGGRATVTSPGSASENATIKSDEWLLDNATIPSVKGAAVRYLAGQANSTDPTAYPDGSNHNGVPLTTSMYTGSNTYSFSVAPNFVSENDYIPFLMGAAGGNEGAQVFDIYIKHLSTNSALRFKMYAEKYRNSVLMESVQMSKVGAAAGQELNDLAATAQAVNHWTLTHDFGEWLEGDYLVFRQKVYNTSPSSSNNYQWDARSGASYASLPIGPVQGIQKSLSTFTSNASMAGKKLRLKRTFTNRNNEVVSNSNEITLEAATTQTFAPTNLTAPTIVAKSDRSNTVWYVDLGAWNHQPSSFTAQWVDNGIDITGATNLLYTPPSSLEGHTITCRVTATNDVGSASVSTTGKTVLPAAVYYNAATGNDANDGLTEETAKQTTTGSQSIPSGATAIIMEDTGARLLLGSNRSYQGQTSGSVIPSIGALNVNSAVDQYTDGYQSISNIALRNLRILSGDRGITQRQGSNWTLEDLILENVGWTPALSAENCQGMFFYNMTGLTIRRCAFNFINSDALYINTCNHVLVEDCSFLPVFTAEGDTIQTRADRTVDGVPGPHQRGFILRRSTLDMHSRKTASGKGDLVTNSQDYKLLADCTFLGNNFSVATDEGDNHTCYRCDFSYGRKNSYSSAYSIGGYDNEPSSHNHVLYDNRIYDYNRALSWTGISVTGYTGAKAGRVDMQVYDQTIVKCSTGMRIDRPTSGIFMGFVFHNVTKVLDRALTTLPSDNQLGFVWGPHYTYNGAIQNPPPVTTRATISGTREVGEILSGDDAVFDTSEVLTAFPSAVITRSYQWRRHKPMPKIAAWNQHMGWSCEYIDGATDSDYTIQTEDQGCRLSRVDRIHLTFTEAGVTKVVTAIAYDGTYPTSSEVLRTGDLATTLPVLVTSGGVLSAAAVEGTIVLDFPALITGETRTLLNPSRAYDPYTGTAYSIDVNGDLVKGSDPAVVSGNTYSITVRQQRGIDVVDYRISIVASA
Physico‐chemical
properties
protein length:1206 AA
molecular weight: 129712,47500 Da
isoelectric point:5,07938
aromaticity:0,08458
hydropathy:-0,21493

Domains

Domains [InterPro]
DC_1007
ATT
112–254
DC_1007 G3DSA:2.60.40.2700 DC_2223 DC_0572
DC_0400
STR
214–601
DC_0400 G3DSA:2.60.40.2700
IPR011050
STR
589–948
IPR011050
A0A7S5QZI3
1 1206
Architecture
ATT
STR
RBD
ATT 112-254 | STR 255-948 | RBD 949-1206
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A7S5QZI3
1 1206
Domain Start End Length (AA) Confidence
N-terminal 1 230 230 0,8714
Central domain 231 429 200 0,8517
C-terminal 430 1206 776 0,1400
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-230
Central
231-429
C-terminal
430-1206

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y2_6
[NCBI] 		2509576 Uroviricota > Caudoviricetes > Schitoviridae > Acanvirus > Acanvirus Y26
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
e75893651a549e179b3db8654fb280b7cb09937f61ba72d0f0e1d5cf93bbe0be
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2725
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50