Protein

View in Explore
Genbank accession
XNL98483.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,56
Protein sequence
MSNLTFIVHLGDGSTQSFPIAAAGETLGYFRAEDIHGYVDGVEVPTFIEPTSPHLLIFVTAPPAGSEVLVRRIMPVEKPYADFERGNNFGPRQINNTFLQQLYLTQELLDGFLPDGYYLKQEMNAGGYRITNIGDAQEPEDAVNKKMTDLITSRVEAIEESMPVGSGAYIVPFYYEAIGGEAEVETFRPFTYCRLSINGINQAPNKSFSFLNGKIYFAEPLEEGDIVHAELGSPDVMTVIQPLSDARLIAYEGQDQFTISPATDVRVYLNGIRQSPLHSFTWVGTTLILAEPLTEGDVVDIEYMPA
Physico‐chemical
properties
protein length:306 AA
molecular weight: 33835,71060 Da
isoelectric point:4,38634
aromaticity:0,10784
hydropathy:-0,10131

Domains

Domains [InterPro]
DC_0041
STR
1–255
DC_0041
IPR005604
ATT
5–111
IPR005604 DC_0116
XNL98483.1
1 306
Architecture
ATT
STR
ATT
ATT 1-111 | STR 112-245 | ATT 246-304 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XNL98483.1
1 306
Domain Start End Length (AA) Confidence
N-terminal 1 304 304 0,9979
Central domain 305 304 1 0,3556
C-terminal 305 306 1 0,6088
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-304
Central
305-304
C-terminal
305-306

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VcaP_R25D
[NCBI] 		3374688 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
[NCBI] 		1224742 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio campbellii

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XNL98483.1 [NCBI]
Genbank nucleotide accession
PQ464789.1 [NCBI]
CDS location
range 35477 -> 36397
strand +
CDS
ATGAGTAACCTAACGTTCATAGTCCACCTAGGGGATGGGAGCACTCAGTCGTTTCCTATCGCAGCAGCAGGTGAGACATTAGGTTACTTCCGCGCAGAAGACATACATGGATATGTTGATGGCGTAGAAGTGCCTACATTTATAGAACCCACTTCACCTCACTTACTAATTTTTGTAACAGCACCTCCGGCAGGTTCAGAGGTGCTAGTAAGGCGTATAATGCCTGTAGAGAAGCCTTATGCTGATTTCGAGAGAGGTAATAACTTCGGCCCTCGGCAAATCAACAATACATTCCTACAGCAGTTGTACTTGACACAAGAGCTTCTCGATGGTTTCTTACCTGATGGATACTACTTAAAGCAAGAGATGAATGCAGGTGGTTATCGTATTACTAATATAGGTGATGCCCAAGAGCCAGAAGATGCAGTTAATAAAAAGATGACTGACCTGATTACTAGTAGAGTAGAGGCTATAGAAGAATCAATGCCAGTTGGTAGCGGTGCTTACATTGTTCCATTCTACTATGAAGCTATCGGGGGTGAGGCTGAAGTTGAAACATTCCGACCTTTCACTTACTGTAGGTTGAGTATCAATGGTATCAACCAAGCACCTAACAAATCTTTCAGTTTCTTGAATGGTAAGATTTATTTTGCAGAGCCTTTGGAAGAGGGTGACATTGTTCATGCAGAGCTTGGTTCCCCTGATGTGATGACAGTGATTCAACCATTGTCTGACGCAAGGCTTATTGCCTATGAAGGACAAGACCAGTTCACTATTAGTCCTGCCACAGATGTGAGAGTTTATCTTAATGGTATCAGGCAGTCACCTTTACATTCATTCACATGGGTAGGTACTACCTTAATACTGGCGGAGCCTTTAACAGAAGGTGATGTAGTTGATATTGAGTACATGCCCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e5310bb5f0ef0d3e0e09cce863b887b68b494355690ccf916609d30f543798db
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8527
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50