Protein

View in Explore
Genbank accession
XYL03164.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MNNTNRHISDEAIYVRFDPAGSNFNSSVDNVQEALSLLSPDAVSGTPSATETVQGKIRIGTQEEVNNGILGDVAVTPKTLELRLQRPQATTDVFGVTRYATNDEALTGTATDRSIVASALKHVIDWTFTNRTSSESRNGVLKLSSTPAAQAGVDDTTAMTPLKTKQAIAAATALIPAYGPATESAQGVVRLATLAQLRDPNIREGFSASPFTLNQWQATESNIGAIKLASQANMDGSSNNTAVTPAKFNSQRATTNRVGTTLLANNIGDGSRALSGSAAVLPSDRAAVSTGGVYEGNTSPNQKYMTKGELDTTVPVGGMFMAAFNGDHGNLMIANGRWLPVSGYPTLFQRIGFTYGGNGSDHFALPDMRGVTARGFDAGRGVDPGRGFGTYQEDAQQRIWGNWTIDDQAAWSNYPPDGAYYADGWGSINYDAGSKDNRWTALRMHFDSSRVVRTANENRMKNVAINYVIRVK
Physico‐chemical
properties
protein length:472 AA
molecular weight: 50437,22150 Da
isoelectric point:6,25237
aromaticity:0,07627
hydropathy:-0,40169

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
IPR037053
ATT
303–369
IPR037053
SSF88874
STR
310–471
SSF88874
IPR011083
ATT
320–371
IPR011083
XYL03164.1
1 472
Architecture
STR
ATT
STR
STR 1-302 | ATT 303-371 | STR 372-471 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SAg-RPN19
[NCBI] 		3452860 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Agona
[NCBI] 		58095 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL03164.1 [NCBI]
Genbank nucleotide accession
PV890570 [NCBI]
CDS location
range 167027 -> 168445
strand +
CDS
ATGAATAATACTAATAGACACATATCAGATGAAGCGATTTATGTGAGATTTGATCCAGCGGGAAGCAACTTTAACTCTAGCGTTGACAACGTCCAAGAGGCTTTAAGTTTGTTAAGTCCAGATGCTGTGTCAGGAACTCCCTCTGCAACTGAGACTGTTCAAGGAAAAATTAGAATAGGTACTCAGGAAGAAGTAAATAATGGTATTCTTGGAGATGTCGCCGTAACTCCAAAAACTCTCGAACTTCGATTACAGCGCCCTCAAGCTACAACCGACGTATTTGGAGTAACTAGATACGCAACAAATGATGAAGCTTTGACTGGTACAGCGACCGACAGAAGTATCGTAGCATCGGCTTTAAAGCATGTAATTGATTGGACATTTACAAATAGAACGTCGTCTGAATCTAGAAATGGTGTTCTTAAATTGTCATCTACCCCAGCTGCCCAAGCCGGTGTAGATGACACAACTGCAATGACTCCATTAAAAACTAAACAAGCCATCGCCGCCGCCACAGCTCTTATTCCAGCATATGGACCAGCTACAGAATCAGCACAAGGTGTTGTTAGATTAGCTACATTAGCTCAGTTACGTGATCCTAATATCAGAGAAGGATTTAGTGCATCTCCATTTACTTTAAATCAATGGCAAGCAACAGAAAGTAATATTGGTGCAATTAAATTAGCTTCGCAGGCTAATATGGATGGATCTTCTAATAATACTGCTGTAACACCTGCTAAATTTAATAGTCAACGTGCAACAACGAATCGTGTTGGCACAACTTTATTAGCCAACAATATAGGAGATGGCTCAAGAGCTTTATCAGGATCAGCAGCCGTTCTTCCGTCAGATAGAGCTGCAGTATCAACTGGTGGTGTTTATGAAGGAAATACATCTCCTAATCAGAAATATATGACAAAGGGAGAATTGGATACAACGGTTCCAGTTGGTGGAATGTTCATGGCTGCTTTCAATGGTGATCATGGTAATTTAATGATCGCAAACGGCAGATGGTTGCCTGTATCTGGTTATCCAACTTTATTTCAGCGAATAGGTTTTACTTATGGCGGCAATGGATCAGATCATTTTGCTTTACCAGACATGCGCGGCGTGACAGCTCGTGGATTTGATGCTGGGCGTGGTGTTGATCCAGGACGAGGTTTTGGAACATATCAGGAAGATGCTCAACAAAGAATCTGGGGTAACTGGACTATTGATGATCAGGCCGCTTGGTCGAACTATCCTCCTGATGGAGCATATTATGCTGATGGCTGGGGAAGTATTAACTATGACGCAGGATCAAAGGATAATCGTTGGACTGCATTAAGAATGCACTTTGATTCATCTAGAGTAGTTAGAACCGCAAATGAAAACAGAATGAAAAACGTCGCGATAAACTACGTTATTCGCGTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4a64278610e0c44fd7ba5104091882da82e4efb8a4ce966fbc7d65a76bbcd011
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7427
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome analysis of Salmonella phage vB_SAg-RPN19 Imklin,N., Jaipakdee,S. and Nasanit,R. 2022-01-10 — GenBank