Protein

View in Explore
Genbank accession
AHJ87864.1 [GenBank]
Protein name
tail fiber protein H
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSDTFRKVVNFPVGIKKTAVASAAADVVNLGEVQALVAGLNLAKEAVAVDTHDNIDLATGGLIVIDGYQTIDGDRVLVREQTDSSQNGIYIASSGAWSRATDADEAAELKAKTSVTVLNGPHSGRKYELQEDQPVVGTDAQTWIVTSASSSAAVDTTVDTTNFDRINPASSNAQSALDSVDDLLVTITDTVDSINGAGAGAQDYGTFTGSTLSDNASGKILFQELETAHEQLVTDLANDRFESTVTTLTTGSTITFTHNIGTQFLSGLKVYNVVEGANEDITHTVTIVAVDGNNVTVQNDGDPVDVVVVCAK
Physico‐chemical
properties
protein length:312 AA
molecular weight: 32585,34470 Da
isoelectric point:4,19406
aromaticity:0,04808
hydropathy:-0,05481

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PVA1
[NCBI] 		1461743 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio alginolyticus
[NCBI] 		663 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AHJ87864.1 [NCBI]
Genbank nucleotide accession
KJ395778.1 [NCBI]
CDS location
range 23485 -> 24423
strand +
CDS
ATGTCTGATACATTTCGCAAGGTGGTCAACTTCCCAGTTGGCATTAAGAAAACTGCAGTAGCATCGGCAGCGGCTGACGTAGTTAACCTGGGTGAAGTTCAAGCCCTTGTTGCTGGCCTTAACCTGGCAAAAGAAGCGGTAGCAGTTGATACTCACGATAATATCGACTTAGCTACTGGCGGATTGATTGTGATTGATGGCTACCAAACCATTGACGGTGATCGCGTTCTTGTTCGAGAGCAAACTGATTCATCACAAAACGGTATTTACATTGCATCGTCTGGTGCTTGGTCTCGTGCAACTGATGCTGATGAAGCGGCAGAGCTAAAGGCCAAAACTAGCGTGACTGTTTTGAATGGTCCTCACTCTGGTCGTAAGTACGAATTACAAGAAGATCAGCCAGTTGTTGGTACAGATGCGCAAACATGGATTGTTACCTCTGCATCGTCTAGCGCGGCGGTAGATACCACTGTAGACACGACTAACTTTGACCGCATTAACCCTGCGTCAAGCAACGCCCAATCAGCTCTTGATTCTGTCGATGACTTACTGGTAACAATTACCGACACAGTTGACTCAATTAACGGTGCTGGCGCTGGCGCTCAAGATTACGGCACGTTTACTGGCTCAACTCTAAGCGACAATGCAAGCGGTAAAATTCTATTCCAAGAGCTTGAAACTGCACACGAGCAGCTAGTTACCGACCTTGCAAATGACCGATTTGAGTCTACAGTAACAACCCTAACCACTGGCTCAACCATCACCTTTACTCATAACATCGGCACTCAATTCCTATCTGGACTCAAGGTGTACAATGTTGTCGAAGGTGCTAACGAGGACATCACGCACACAGTAACGATTGTTGCCGTTGATGGTAATAACGTAACAGTGCAAAACGATGGCGACCCAGTAGATGTCGTTGTAGTCTGCGCCAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5796cb1065b8c7542cfe31fd43b9e48a3b53054be4f5131b940bf0fce16dc7ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7878
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of the Vibrio alginolyticus lytic bacteriophage PVA1 Zhang,J., Xu,Y., Jin,L., Cao,Z., Cao,F. and Li,Z. 2014-08-27 — GenBank