Protein

View in Explore
Genbank accession
QBX25856.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGTINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTIFYENKNKKVVTKMTADKNLGGRLGVLSVDFTNTADGACFGAVKELNLPQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKVKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI
Physico‐chemical
properties
protein length:503 AA
molecular weight: 57029,66850 Da
isoelectric point:5,83165
aromaticity:0,13121
hydropathy:-0,43678

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
1–124
G3DSA:2.40.30.200
DC_0420
STR
2–503
DC_0420
IPR008841
STR
18–116
IPR008841
IPR006520
Unmapped
37–124
IPR006520
QBX25856.1
1 503
Architecture
ATT
STR
ATT 1-124 | STR 125-503
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBX25856.1
1 503
Domain Start End Length (AA) Confidence
N-terminal 1 186 186 0,9420
Central domain 187 385 200 0,1784
C-terminal 386 503 117 0,5147
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-186
Central
187-385
C-terminal
386-503

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage Javan278
[NCBI] 		2548091 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus intermedius F0413
[NCBI] 		883167 Bacillota > Bacilli > Lactobacillales > Streptococcaceae > Streptococcus > Streptococcus intermedius

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBX25856.1 [NCBI]
Genbank nucleotide accession
MK448896.1 [NCBI]
CDS location
range 24166 -> 25677
strand +
CDS
TTGATAAAAGTATATTTTAATGATGTTGAATTAACAAAATGGATCACTGTTTTAGATGGATTTACCGCCTTGGGTGGTGCAGACTATGATCCGACTTTCCATAACTATCCAATACTTAATGGATCGGAATTTATCAAGACTCGCAAGAAGTTGAAGAAGATTCCTGTGCCGTTTTATGTAAAATATGAAGGTGTGGCTGACTATGATGCACTGCAGACGAGTCTCAATGTGGATGAGCCGAAAAAGCTGACTTTCAGTCATTTGCCTGATCGTGTTTTTTACGCTATTCCGAGCGGGGATCTTGATTTTAAAGAAATCAAGTTCAGCGGCAAAGGGACAATTAATTTTTCGATTGTGGATGGTTTGGCACATTCCAAGAATCCGCGCTATTTTGAGTTTAAGAAAAATGAACAAGGCATTTTAGAAGCCGAGATTGAAAACAACGGCAGTGAAGAAATTCCAGTGAATTACAGAATTAAACTCAAACGAGAATCAGGTTTTGTTGGCATTACTAGTCGATATGGAGCAATGCAGTTTGGAAAAATCGAAGAAACTGATTCAGTTGAGGACAAAAAGAATGTCTTGCTGTCCGCAAATGGAACGGGTGATTTTAGCAACTGGACAGATGGTACTATTTTTTACGAAAATAAGAACAAAAAAGTTGTTACGAAAATGACTGCAGACAAAAATCTTGGTGGTCGTTTGGGAGTGCTGTCTGTAGATTTTACAAACACAGCTGACGGAGCTTGCTTTGGAGCGGTCAAAGAGTTGAATCTGCCTCAACAAGCTAAAGACTGGTATATTTGGGCTCGCGCTTGGTTTGAGACTGGCTATGTTAGTCAGACGGGGGCATGGTGCTTGTCAGTTGTAGACAGCGACAATCATTTTATAGCTGGCATGGCGATTGAAAAAAGCGAACGAACACGCAATAAAGCACTAGTTGTATTCCTTATGGGAGATGGAGCCGGTGGCAGTCGAGTTGTAAAATCCATTGAGTTTTCGCCAACTCTTTGGGTCAAAGATAACCCTTATAGTTTGGAGGGGAAAGACCAAAACAGAAATATGTTTGACTTGCGAAAAGAAGGAGATAAAATCACCTACTTCTGGTACGGTAGTTATCATTCTTTTTTCGAATCAAAAGTCAAGGATAAGCAAGCAGCTAAAGTTCAGTTTTTCGTTGGACAGTATAAAGGGCGAAACTCGACTATAAACGAATTGGTAACACATCATTATTTAAATGATTTTGCCATTTATAAATTAAACGTGCCATACTGGCGCGACGTACCGAATCGCTATCCGACAGGAGCAGAACTTTTTATAGATTCAACAGGAGAAGTAAATCCAGAAGAAAAAGGGCGATTGTATGTCAATAACTTATTAGCTCCAGATGATGAGATTTTGGGGACAGACTACTTTAAGGTTCCGCCTGGAAAAACAAAAGTACAGCTGCTTGTGTCAAGTTTTGCGGAAGTAGAGAGCGCACGAGCTGAAATTGAGGAGGCATGGATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
5e2b3244f9ac57b5b41f81dc838cd13945d600f4dc9e00d23307c4e2f1600e7f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8177
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Prophages and satellite prophages are widespread among Streptococcus species and may play a role in pneumococcal pathogenesis Rezaei Javan,R., Ramos-Sevillano,E., Akter,A., Brown,J. and Brueggemann,A.B. 2018-12-20 — GenBank