Protein

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Genbank accession
AUS03041.1 [GenBank]
Protein name
tail collar domain protein
RBP type
TF
Evidence RBPdetect
Probability 0,86
TF
Evidence RBPdetect2
Probability 0,86
Protein sequence
MAFIFNHVEQTINVTDTSKEIVLDSSTAIKIPIAANTTPLVSEYRNTVIINDSPVANVSLLTDSSGNTTQLSADGRLHFHDSNSWKSISEYSDIDLIRTHNTIRLEQVASPIEDRLSVTEAKAALPTGTIMMWNQSTPPAGWAFCNGANGTPDLRNKFILASNNFESGTGGIEKAEVSITQMPTHDHVAPWGEHGANGAPWGYYGAMNNYGGNGGSDWDNNWPYSSRVGSGTAPTHNNIPPLYALAYIMYLG
Physico‐chemical
properties
protein length:252 AA
molecular weight: 27273,83970 Da
isoelectric point:4,99952
aromaticity:0,08730
hydropathy:-0,33452

Domains

Domains [InterPro]
DC_0147
STR
2–252
DC_0147
cd22641
STR
46–251
cd22641
IPR037053
ATT
123–147
IPR037053 IPR044916
SSF88874
STR
123–249
SSF88874
AUS03041.1
1 252
Architecture
STR
ATT
STR
STR 2-122 | ATT 123-147 | STR 148-252
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 2.275.O._10N.286.54.E11
[NCBI] 		1881285 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio cyclitrophicus
[NCBI] 		47951 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AUS03041.1 [NCBI]
Genbank nucleotide accession
MG592671 [NCBI]
CDS location
range 322816 -> 323574
strand +
CDS
ATGGCTTTTATTTTTAATCACGTTGAACAAACTATTAACGTAACTGACACTTCAAAAGAAATAGTTTTAGATTCTTCTACGGCTATTAAAATACCTATCGCAGCAAATACCACTCCATTAGTTTCAGAATACAGAAATACTGTGATCATTAATGATTCTCCTGTGGCTAATGTATCACTTTTAACCGATAGCTCCGGCAACACAACACAACTATCAGCTGATGGTAGATTGCACTTTCATGATTCAAACTCGTGGAAATCAATATCAGAATATTCTGATATTGATTTGATAAGAACACATAATACTATTCGTTTGGAACAAGTAGCATCTCCTATTGAAGACAGATTATCTGTCACTGAGGCTAAAGCTGCTCTGCCGACAGGAACGATCATGATGTGGAATCAAAGCACTCCTCCTGCAGGATGGGCATTTTGTAATGGTGCCAACGGCACCCCTGATCTACGAAATAAATTCATACTGGCTAGTAATAATTTCGAAAGTGGTACTGGCGGGATTGAAAAAGCAGAAGTGAGTATAACACAAATGCCAACACATGATCATGTAGCACCATGGGGAGAGCATGGAGCAAACGGGGCACCATGGGGATATTATGGTGCAATGAACAACTATGGAGGTAATGGAGGGTCTGACTGGGATAACAATTGGCCATATAGTTCTAGAGTTGGATCAGGCACAGCGCCTACTCATAATAACATCCCTCCATTATATGCTCTAGCATATATTATGTACTTAGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0b206cd550dc7b54e4f401cc49db953841ec6b85c32bcf06912709ae28b8d68c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5585
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A major lineage of nontailed dsDNA viruses as unrecognized killers of marine bacteria Kauffman,K.M., Hussain,F.A., Yang,J., Arevalo,P., Brown,J.M., Chang,W.K., VanInsberghe,D., Elsherbini,J., Cutler,M.B., Kelly,L. and Polz,M.F. 2018-01-24 — GenBank