Protein

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Genbank accession
YP_009816549.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,81
Protein sequence
MADRIVRSLRRVEDIDRLADFLTEENDLISTSDGHIYVRTDSSYYKLTFYNDLKTLIDKYSGQIDKHDIAINDNKEKISTFLEKIKKFQPMIDSNKKEIDSLKEKDVILNESLEQHQTQLNEFEKSMLQYDDKYETLTQSLNATKDSVGRNTDEINFIKANTGAENIDTKIAQSKSEIEQNFDKKINSAKLQFNDTGWQDVQLESGIVASDSNGGYPAPQYRIVTINGFKTIQLKGVLKGIKKNGDIKLGTINAKLKSTHHYTQCAIDNKMINTRLYLNFNNELHFVTSNYSDSELSNGDIRFAIDTQIIE
Physico‐chemical
properties
protein length:311 AA
molecular weight: 35620,41030 Da
isoelectric point:5,41740
aromaticity:0,08039
hydropathy:-0,69775

Domains

Domains [InterPro]
DC_2246
RBD
30–309
DC_2246
Coil
Unmapped
113–133
Coil
YP_009816549.1
1 311
Architecture
RBD
RBD 30-309 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage Pabna
[NCBI] 		2483713 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus subsp. aureus RN4220
[NCBI] 		561307 Bacteria > Firmicutes > Bacilli > Bacillales > Staphylococcaceae > Staphylococcus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009816549.1 [NCBI]
Genbank nucleotide accession
NC_048107 [NCBI]
CDS location
range 10275 -> 11210
strand -
CDS
ATGGCTGATAGAATCGTAAGAAGTTTAAGACGTGTCGAAGATATAGACCGTTTAGCAGATTTTTTAACAGAAGAAAATGACTTGATCAGTACATCAGACGGACATATTTATGTCCGTACTGATTCAAGTTATTATAAATTGACATTTTATAATGATTTAAAAACATTGATTGATAAATACAGTGGTCAAATAGATAAACATGATATTGCGATTAATGATAACAAAGAGAAAATATCAACATTTTTAGAGAAGATAAAAAAATTCCAACCAATGATTGATAGTAATAAAAAAGAGATTGATTCATTAAAAGAAAAAGACGTCATATTAAATGAAAGTTTAGAACAACATCAAACACAATTAAATGAATTTGAAAAATCAATGTTACAGTATGATGATAAATATGAAACACTTACACAATCGTTAAACGCTACTAAAGATAGTGTAGGACGTAACACAGATGAAATTAATTTTATTAAAGCAAATACTGGCGCAGAAAATATTGATACTAAAATTGCGCAATCCAAATCAGAAATTGAGCAAAATTTTGATAAAAAAATTAACAGTGCAAAATTACAATTTAATGATACAGGTTGGCAAGATGTGCAACTTGAAAGTGGTATTGTTGCAAGTGATAGCAACGGTGGTTATCCTGCACCGCAATATCGTATTGTAACAATTAATGGTTTTAAAACCATACAATTAAAAGGGGTATTAAAAGGGATTAAGAAAAACGGTGATATTAAATTAGGTACGATTAACGCAAAATTAAAATCAACACATCACTACACACAATGTGCGATTGATAATAAAATGATTAATACAAGATTATATTTAAACTTTAATAATGAATTACATTTTGTTACATCAAATTATAGCGATAGTGAGCTTTCAAATGGTGATATACGTTTTGCAATAGATACACAAATCATTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
70b2de279c31cd619e96ca2e13ec5583fdcf99365f08acf8c9e0a22051528d54
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8310
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Staphylococcus podophages JBug18, Pike, Pontiff, and Pabna Bari,S.M.N., Hernandez,A.C. and Hatoum-Aslan,A. — — GenBank