Protein

View in Explore
Genbank accession
ANM47017.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MERYKDNFPRKVNDQFRGNVIQNARMSQKDRETLKKIAREYQRDKQSSEIKHGNSTVEKELKNLRNQVKSQIIGANGNATAEVKDMRVDTKGQLHDLAQDRLNEDFNRIGGIADAAKETADVLENKMNTGAYYNEVSHFKGRKFDTTYYITHIPHLDSNGNMIKLKRGIQGNDPNKPEHITPSQFARKTKATFVSNASTGSGTQLKLHGQQIYNGQILDSIKGDEYDALNDRWTLAIGDDNSLTSFPPDVQASEIRNQGYNNTVSGFGPIISDGKIIVKDDDYSPNTIVSHPRQVIAQLPNKDLIFFSCDGRENNTHTMIEKGMTLQEVAETLLDHYDIEFAYNMDGGGSTSSVVRSHKLNKSMDENKTEERKVLDFLYIGRDSVQLRDQDMQNAYQDIGEVRDMVQEVRGMLYSLRRVSGKEFGLTGYDQYTGFLSFDDEGNPKKKFYMGTEGFRMFDYDTSTTQFRVSGKYLQYMGKALATNYSAPPNVTDLNNIELGGTYHATSKAKGSPYPNTSSCVVTQYNITYSLKDDDTTAFQFAVPFARSQNVRMKRRTYAQGAWSQWFDV
Physico‐chemical
properties
protein length:569 AA
molecular weight: 64499,97140 Da
isoelectric point:6,66138
aromaticity:0,09490
hydropathy:-0,80914

Domains

Domains [InterPro]
DC_1253
STR
2–567
DC_1253
PTHR40446
Unmapped
178–381
PTHR40446 cd19958
IPR018711
STR
207–380
IPR018711
ANM47017.1
1 569
Architecture
STR
STR 2-567 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SauS_IMEP5
[NCBI] 		1852565 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ANM47017.1 [NCBI]
Genbank nucleotide accession
KX156762.1 [NCBI]
CDS location
range 22718 -> 24427
strand -
CDS
ATGGAACGATATAAAGATAATTTCCCTAGAAAAGTTAATGATCAATTTAGGGGTAATGTGATACAAAACGCTAGAATGTCACAAAAAGATAGAGAAACCCTTAAAAAAATAGCAAGAGAATATCAGCGAGATAAACAATCAAGTGAAATCAAACATGGTAATTCTACTGTTGAAAAAGAATTGAAAAACTTACGCAATCAAGTAAAGTCACAAATTATTGGTGCTAATGGCAATGCTACTGCCGAAGTAAAAGACATGCGTGTTGATACAAAAGGACAGTTACATGACCTTGCACAAGATAGATTAAACGAAGATTTTAACCGTATAGGTGGCATAGCAGACGCAGCAAAAGAAACGGCTGATGTGTTAGAAAATAAAATGAATACGGGTGCTTATTATAATGAAGTATCACATTTCAAAGGTCGCAAGTTTGATACAACGTATTATATAACGCATATTCCCCACTTAGACAGTAATGGCAATATGATTAAATTAAAGCGTGGTATTCAAGGTAATGACCCTAATAAACCAGAACATATCACACCATCACAATTTGCGAGAAAAACAAAAGCGACATTTGTGAGTAACGCCAGTACTGGTAGTGGTACACAATTAAAATTACATGGTCAACAAATATATAACGGTCAAATATTAGATAGTATTAAAGGTGATGAATATGACGCATTAAATGACAGATGGACACTAGCAATTGGCGATGATAACTCTTTAACATCATTCCCACCTGATGTACAAGCTAGTGAGATACGTAACCAAGGATATAACAATACTGTGAGTGGCTTTGGTCCTATCATTTCAGACGGTAAAATAATTGTGAAAGATGACGACTACAGTCCAAACACAATTGTAAGTCATCCAAGACAAGTGATTGCACAATTACCAAACAAAGACTTAATATTCTTTAGTTGTGATGGACGAGAAAACAACACACATACCATGATAGAAAAAGGTATGACGTTACAAGAAGTAGCTGAAACATTACTCGATCATTATGATATTGAGTTTGCTTACAATATGGACGGTGGTGGTAGTACGTCATCTGTTGTGCGTTCACATAAGTTGAATAAGTCAATGGACGAGAATAAAACAGAAGAACGTAAAGTACTAGACTTCTTATATATCGGTCGTGATAGCGTACAGTTACGTGACCAAGATATGCAAAATGCTTACCAAGATATTGGCGAAGTAAGAGATATGGTACAAGAAGTTAGAGGTATGTTATATAGTTTAAGACGTGTAAGTGGTAAAGAGTTTGGTTTAACAGGCTATGACCAATACACTGGTTTCTTGTCATTCGATGATGAGGGTAACCCTAAGAAGAAATTCTATATGGGTACAGAAGGTTTTAGAATGTTCGACTATGATACGAGTACTACACAATTCAGGGTATCGGGTAAATATCTTCAATATATGGGTAAAGCATTAGCGACAAACTATTCAGCACCACCAAACGTTACAGATTTAAATAACATTGAACTTGGTGGAACGTATCATGCTACTAGTAAAGCTAAAGGCTCACCATATCCTAATACTAGCAGTTGTGTCGTAACACAATATAATATTACTTATTCATTAAAAGATGATGATACAACAGCCTTTCAATTCGCAGTACCGTTTGCACGTTCGCAGAATGTAAGAATGAAGCGCAGAACATATGCACAAGGCGCTTGGTCACAATGGTTTGACGTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
8a9710904bf611f4da47c16ca91ff59b78a82aa238817b768584fea1a23c5c98
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8454
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and complete genome sequence analysis of a novel virulent Siphoviridae phage against Staphylococcus aureus isolated from dairy cows with mastitis in Xinjiang, China Zhang,X., Zhang,Q., Sun,Q., Xing,S., Gang,Q. and Tong,Y. 2017-03-15 — GenBank