Protein

View in Explore
Genbank accession
ABF57494.1 [GenBank]
Protein name
gp40
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MSRFCLLERNIMADLTPPNTGSEALNEYLTRLQQVVNALDLKKIPEEGWSLTDLRADVSEVISDKRDIIDVANEAASKLAEVKALVMDLDGYEQSLEGAEAFKVAAESLIDWYDQNEVSIRILLGIVNKPGGTAELIEAFDTIRIGAAQSASAAKTSETNAKTSATNAKTSETTAKTSATNAKDSETAAARSKTAAATSATNAKTSETNAATSATNAANSATASANSATDAANSANSITDGAEVATSKAAEAAAAADRAEQAMAGKADLIGGKVPTAQLPEISLTKPFSVASRTALLALDVQEGDVGIITAGSDKGSYILGSGPSKVFSSWIPLAVSADAPVQSVNGQTGTVVLSAANVGAAPTSHTHTASQISGLPSTDGGYNTRDATDPASSYPAGVDVSLNNVNKGWSSVIGAASLPSLGSYVVVTTVRQGFYNESTWQYLSSCTLPGSSIYVRKWQNDAWTTLRRLTDDGHTHTSAQISDATSLVTESTVVRRDSAGDFYVKTPTASTHPASKTYVDSGLTNTYTAMYKRPALFSGAGNPPSSIPGAVVGDYWLNETTMQLRKITGV
Physico‐chemical
properties
protein length:571 AA
molecular weight: 59264,80530 Da
isoelectric point:4,93899
aromaticity:0,05429
hydropathy:-0,20280

Domains

Domains [InterPro]
DC_1656
STR
120–326
DC_1656 DC_2047
Coil
Unmapped
242–262
Coil DC_2047
ABF57494.1
1 571
Architecture
STR
STR 120-563 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Corynebacterium phage P1201
[NCBI] 		384848 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Corynebacterium glutamicum
[NCBI] 		1718 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABF57494.1 [NCBI]
Genbank nucleotide accession
DQ499600 [NCBI]
CDS location
range 23806 -> 25521
strand +
CDS
GTGTCGCGCTTTTGTCTTTTAGAAAGGAATATAATGGCAGATTTAACCCCTCCCAATACGGGGAGCGAGGCTCTTAACGAATACTTAACGAGGCTCCAGCAGGTCGTAAACGCCCTAGATCTCAAGAAGATCCCTGAAGAGGGGTGGAGTCTGACCGATCTAAGGGCAGATGTGTCCGAGGTCATCTCTGATAAAAGAGATATTATCGACGTAGCTAATGAGGCAGCCAGCAAGCTGGCTGAAGTCAAGGCACTCGTTATGGACCTTGACGGATACGAGCAGTCTCTGGAGGGAGCTGAAGCCTTCAAGGTCGCAGCAGAGAGCCTCATTGATTGGTATGACCAGAACGAAGTTTCGATCAGAATCCTCCTAGGCATAGTAAACAAACCAGGTGGAACAGCGGAACTTATTGAGGCATTCGACACCATTAGAATTGGGGCAGCGCAGTCAGCTTCAGCAGCGAAGACTTCTGAGACCAATGCAAAGACTTCAGCGACTAATGCTAAGACCTCAGAGACCACAGCGAAGACTTCAGCGACTAACGCGAAGGACTCAGAGACCGCAGCAGCCAGATCTAAGACCGCAGCAGCGACTTCAGCGACTAATGCTAAGACCTCAGAGACTAACGCAGCTACTTCAGCAACTAACGCAGCCAACTCCGCTACGGCATCGGCCAACAGCGCGACGGATGCAGCCAACTCAGCTAACAGCATTACAGACGGCGCAGAGGTGGCGACATCCAAGGCAGCAGAAGCAGCAGCAGCAGCAGACCGAGCAGAGCAGGCTATGGCAGGCAAGGCAGATCTAATTGGAGGAAAGGTCCCTACAGCACAGCTACCGGAAATCTCCTTAACCAAGCCCTTCTCTGTCGCCTCGCGCACCGCGCTACTGGCACTCGATGTGCAAGAGGGTGACGTTGGCATTATCACAGCTGGTTCGGATAAAGGCTCCTACATCCTGGGGTCTGGCCCATCTAAGGTATTCTCCTCTTGGATTCCGCTGGCTGTCTCGGCCGACGCCCCAGTCCAGTCTGTCAATGGTCAGACAGGCACAGTGGTACTCAGTGCAGCTAATGTTGGTGCTGCTCCGACTTCGCACACACACACCGCGTCTCAAATCTCAGGATTACCCTCTACAGATGGAGGCTACAACACTAGAGACGCAACAGACCCTGCCTCATCCTACCCTGCAGGTGTTGACGTCTCTCTAAATAACGTAAATAAAGGGTGGTCATCGGTCATCGGGGCAGCCTCCCTACCTAGCCTGGGTTCGTACGTTGTGGTGACTACTGTTAGGCAAGGGTTCTATAATGAATCCACCTGGCAGTATCTGAGTTCCTGCACCCTACCTGGATCTTCCATTTATGTTCGGAAGTGGCAAAATGACGCATGGACTACGCTACGCAGACTTACTGATGATGGGCACACGCATACCAGTGCGCAGATCTCAGATGCAACTTCTCTGGTTACAGAATCCACAGTGGTTAGGCGCGATTCAGCTGGTGATTTCTATGTCAAAACACCCACAGCATCTACGCACCCTGCCTCTAAGACCTACGTGGATTCAGGGCTGACCAACACGTACACAGCCATGTATAAACGTCCAGCGCTATTCTCTGGTGCGGGAAACCCTCCGAGCTCGATTCCAGGTGCGGTTGTTGGAGACTACTGGCTCAACGAGACCACGATGCAACTACGGAAGATTACAGGAGTCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fbeb4e2b1fd8bc8c62ce3a75ad37a6fb1400f34a4000e10bc0be2991fb626a40
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6900
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of the lytic bacteriophage P1201 from Corynebacterium glutamicum NCHU 87078: evolutionary relationships to phages from Corynebacterineae Chen,C.L., Pan,T.Y., Kan,S.C., Kuan,Y.C., Hong,L.Y., Chiu,K.R., Sheu,C.S., Yang,J.S., Hsu,W.H. and Hu,H.Y. 2008 18599103 GenBank