Protein

View in Explore
Genbank accession
XZP49840.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKDFPANQIYISGACRVNGLRLVGIRSTSGQGLTIDAPNSTVSGITGFVDPSKIRVANLMEEGLGNSRINSFNNDSAALRLRIHKLSKTLDSASVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVAMSALPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA
Physico‐chemical
properties
protein length:220 AA
molecular weight: 23133,74620 Da
isoelectric point:5,90025
aromaticity:0,05455
hydropathy:-0,02091

Domains

Domains [InterPro]
IPR012332
STR
1–220
IPR012332
IPR011050
STR
1–220
IPR011050
IPR015331
RBD
1–220
IPR015331
XZP49840.1
1 220
Architecture
STR
STR 1-220
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XZP49840.1
1 220
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0035
Central domain 11 199 190 0,6796
C-terminal 200 220 20 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-199
C-terminal
200-220

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GF04
[NCBI] 		3458938 Viruses >
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XZP49840.1 [NCBI]
Genbank nucleotide accession
PX241559.1 [NCBI]
CDS location
range 4957 -> 5619
strand +
CDS
ATGGACGGGCAAGGTCTGTATGTCTCTAACATAACCGTCGAGGATTGCGCCGGTTCTGGGGCTTATATTCTGGCCCATGAAACAGTATTCACTAATATTGCTATAATCGACACAAATACTAAAGATTTTCCAGCGAATCAGATATACATCTCCGGGGCCTGCCGTGTAAATGGCCTTCGTTTGGTAGGCATACGCTCTACTAGTGGGCAGGGGTTGACGATAGACGCTCCTAACTCCACTGTAAGCGGTATAACCGGTTTCGTTGACCCTTCTAAGATTAGAGTGGCCAATTTGATGGAGGAAGGTCTAGGAAACTCACGAATTAATAGTTTTAATAACGATTCTGCGGCGCTGCGGTTACGGATACATAAACTGTCAAAAACTTTAGATAGCGCTTCTGTGTATTCGCACATAAACGGCGGCCCTGGTTCTGGTTCAGCGTGGACCGAAATTACCGCTATTGCGGGGTCCTTGCCTGATGCCGTGTCATTAAAAATAAACAGGGGCGATTATCGTGCTGTTGAGATACCGGTAGCGATGTCCGCCCTACCAGACAACGCTGTCAGGGATAACGGGTCTATATCACTGTATCTGGAGGGCGATAGCCTTAAAGCGTTAGTTAAGCGGGCCGACGGAAGCTATACAAGATTAACTTTGGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
266bdf082452188b182be1570918cfebef0e1f7a85ba8c1a455a7bdc86ad9139
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7140
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50