Protein

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Genbank accession
WYW04291.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGQMQINGWSSETQGLQKRPPTKLIKRIYSTGALGVKPLIHMINRDSVEQYYVSFFGTGIAVHDLAGNEYAVRGYNGYANCANPRNDLRLITVADYTFVTNRNTITQMGSTLTNAGQPNVTTRALVSIRGGQYGRTMQILINGGVYGNIQMPNGSAEKVPAGQPYAGMNQVDMTDANWIASTMAAQINAALNPSGWSATSGPGWVMITAPGPGAFASVQTKDGYGDQLMNGFIYQVQTFNKLPAQAPDGYLVEVTGESARTGDNYWVQYSLSGKVWREVAKPGIISGFNATTMPHALVRAADGQFDWVSLGWDGRTCGDDGTNPMPSFIGDRINDVFFFRNRLGFISGENVIMSRTSKYFNFFPASVSALSDDDPIDVAVSHNRVSILKYAVPFAEQLLLWSDQAQFVLSSSGILSSKTVELDLTTEFDVSDGARPFGIGRGVYFAAPRASFTSLKRYYAIQDVSNVKSAEDVSAHVPSYLPNTVFNIAGSGTENFVSLISSGAPGNLYIYKFLYLDEILQQQSFSHWNFGTNVKVLAASSIGSYMYLMLDRPEGIMLERIEFTQSTIDIAQEPYRTYMDQKKLIQIGAYDIDSNLSTITVESILGGLPHADSVFYTIDQQGVLLKHEGPWPSGAKLEFIGNRSGEYVVFGREYEFQYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWLNYENSGSFEINVNNGSSQFVYVMSGGRLGTQMTLGELSLGTGQFKFPVTGNAQAQRVTISSFNPNPLNIIGCGWEGNYMRRSSGI
Physico‐chemical
properties
protein length:800 AA
molecular weight: 87691,52760 Da
isoelectric point:5,66471
aromaticity:0,11125
hydropathy:-0,20413

Domains

Domains [InterPro]
IPR058003
TTP
1–800
IPR058003
WYW04291.1
1 800
Architecture
TTP
TTP 1-800
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW04291.1
1 800
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9930
Central domain 141 339 200 0,2165
C-terminal 340 800 460 0,1862
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-339
C-terminal
340-800

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Kompost-2
[NCBI] 		3132679 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida KT2440 and
[NCBI] 		1481724 Heterolobosea > Eutetramitea > Lyromonadida > Psalteriomonadidae > Monopylocystis >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW04291.1 [NCBI]
Genbank nucleotide accession
PP496475 [NCBI]
CDS location
range 26328 -> 28730
strand +
CDS
ATGGGTCTCGTATCGCAAAGCGTCAAGAACCTCAAAGGAGGTATCTCGCAACAACCCGACATCCTGCGTTTCTCGAACCAAGGCCAGATGCAAATCAATGGCTGGTCCTCCGAGACTCAGGGTCTACAGAAGCGGCCCCCGACCAAGCTCATCAAGCGGATCTATTCGACTGGTGCGCTGGGCGTGAAGCCTCTGATTCACATGATCAACCGGGACTCCGTGGAGCAATACTATGTGTCGTTCTTCGGGACTGGCATTGCGGTCCACGACTTGGCTGGTAATGAGTATGCGGTGCGTGGCTACAACGGCTACGCCAACTGTGCCAACCCAAGGAACGACTTAAGGTTGATCACTGTGGCCGACTATACGTTCGTCACCAACCGCAACACCATCACCCAGATGGGCTCAACGCTGACCAATGCTGGGCAACCCAACGTGACCACTCGGGCCCTCGTGAGCATCCGTGGTGGGCAGTATGGCCGGACCATGCAGATCCTCATCAATGGTGGGGTCTACGGGAACATCCAGATGCCTAACGGTTCCGCTGAGAAGGTGCCCGCTGGGCAACCCTACGCTGGCATGAACCAAGTGGACATGACGGACGCCAACTGGATTGCCTCAACGATGGCCGCTCAGATCAACGCTGCACTCAACCCTTCGGGCTGGTCGGCAACCTCTGGACCCGGCTGGGTGATGATCACTGCTCCTGGCCCCGGTGCGTTCGCTTCGGTCCAGACCAAGGATGGCTATGGTGACCAGCTCATGAACGGCTTCATCTACCAAGTCCAGACGTTCAACAAGCTGCCCGCTCAGGCCCCTGATGGATACCTCGTAGAGGTCACTGGTGAGTCCGCTCGTACAGGCGACAACTACTGGGTCCAGTACAGCCTCTCAGGTAAGGTATGGCGTGAGGTAGCGAAGCCGGGGATCATCTCTGGGTTCAACGCTACGACCATGCCACACGCGCTCGTGAGGGCTGCTGATGGGCAGTTCGATTGGGTGTCTCTGGGATGGGATGGCCGGACCTGTGGTGACGATGGGACCAACCCGATGCCATCCTTCATTGGTGACCGGATCAACGATGTCTTCTTCTTCCGTAACCGTCTCGGGTTCATCTCGGGCGAGAACGTGATCATGTCGAGGACTTCCAAATACTTCAACTTCTTCCCGGCCTCTGTGAGTGCCCTCAGCGATGACGACCCAATCGACGTAGCTGTCTCCCACAACCGGGTGTCGATCTTGAAGTATGCCGTTCCGTTCGCTGAGCAGTTGCTCCTCTGGAGTGACCAAGCGCAGTTCGTGTTGTCCTCATCGGGCATCCTTTCGAGCAAGACCGTGGAGCTGGACCTGACCACTGAGTTCGATGTCTCCGATGGTGCCCGTCCCTTCGGGATTGGTCGTGGCGTTTACTTCGCCGCACCTCGGGCTTCCTTCACGTCCCTCAAGCGCTACTACGCGATTCAGGATGTCTCCAACGTGAAGTCCGCTGAGGACGTTTCGGCTCACGTTCCAAGCTACCTGCCGAACACCGTCTTCAACATCGCTGGGTCGGGCACCGAGAACTTCGTGTCGCTCATCTCCTCTGGGGCACCGGGCAACCTGTACATCTACAAGTTCCTCTACCTCGACGAGATCCTCCAGCAACAATCGTTCTCCCACTGGAACTTCGGGACCAACGTCAAGGTTCTCGCTGCGTCCTCTATCGGCTCCTACATGTATCTCATGCTGGACCGCCCTGAGGGCATCATGCTGGAACGGATCGAGTTCACTCAGTCCACTATCGACATCGCTCAAGAGCCTTATCGAACCTACATGGACCAGAAGAAGCTCATCCAGATTGGCGCCTACGACATCGACTCGAACCTCTCAACGATCACCGTAGAGAGCATCCTCGGTGGCCTGCCCCATGCTGACTCCGTGTTCTACACCATCGACCAACAAGGCGTTCTGCTGAAGCACGAGGGCCCATGGCCTTCCGGTGCCAAGCTGGAGTTCATTGGTAACCGCTCTGGTGAGTACGTGGTCTTCGGGCGTGAGTACGAGTTCCAATACGAATTCTCCAAGTTCCTCATCAAGCAAACTGCCGACGATGGATCGACCTCTACTGAGGACATCGGTCGCTTGCAGCTTCGCCGTGCATGGTTGAACTACGAGAACTCAGGGTCGTTCGAGATCAACGTCAACAACGGCTCCTCTCAGTTCGTCTATGTGATGTCTGGTGGTCGCCTCGGCACCCAGATGACTCTCGGTGAACTGTCGCTCGGCACTGGTCAATTCAAGTTCCCGGTCACCGGCAACGCCCAGGCACAACGAGTGACAATCAGCTCCTTCAACCCGAACCCTTTGAACATCATCGGATGCGGCTGGGAGGGTAACTACATGCGCCGCTCAAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d6bac1243542592f3e2b747f2d4347dad3411796ec1b1b7158768e795e5fa8bb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2737
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank