Protein

View in Explore
Genbank accession
YP_010661201.1 [GenBank]
Protein name
pectin lyase fold domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,91
Protein sequence
MARKTIDELPVASPEAVATGTLLIADENGLEYRATTAILGGVHLFFTDEADQTPFVFGRLTSPGRTVENTQVTLTATPVGGGTAVVKTATTDSLGNFTYDFTSSLARGASYTIEAKVAPYLTETTTKTIAALAAPTVSLTASSTGKVGDPITVDSPTFSGSPTAIRYRYLRGASYVIPGANSNVYTLQPDDDADIITPQVQATNAGGDSPWYSATAIGPVSNKTSVLLTNPVISGSNALGSRIVVSDPGSASENATVKSDEWQLDGARIPTTKAALQRYFAGAAGGSVPTTYPDGSNHHGVSLSSTMYTGSNTYSYSVGISATENDYIISAIGAAGGNEGPQVYDLKIKHLNTNSALRFKMFVAKYRAGALVEEIQMSKVGVTAGTELNELTATANALNSWTATHDFGEWLAGDVLVFRQQARNTSGSSTNNYQWDARNGASYAYLPIGAVNDLQKTLSTFTTRADMAGKKVRLARTYSNRNNDVIGYSNEITLEAAATQSNAPVNTTLPTIVAASDRSNNTWQADFGAWSNQPSSFAIQWLDNGADISGATQMSYKIPSTLEGHDVSFRVTATNDIGSTSATSVAKTVLPAAVFYKTDTGNDSNDGSTPELAKQTLNGSDTIPSGSTAIMQGDFGTRLRLGNSRNYEGTDTALTSIGSTSISYAIDQYTDDGSLGRSNVKISKLRIKSGDRAINARQGSNWTIEDVILENVGFTPIGGIAENASGMMFYKNNGITLRRVQFLLVNSDALFSDTNDKVIVEDCLFLPVFTAEGDTIQTRADRTVNGSPGPHQKGFILRGTHLDMHSRKTSSGKGCLVTNMQDYANSHDNIFEGNNFVHGTDEGDNHVFARNVCSYARKNTYSFGYGIGGYDDQPASHNHHVYDNYWYDIVRAHSYTGIPVTGYTGAKSGRVDIMAHDETVVKCTVGARVDRPTSGKFRGFVFHNVSKPLDRTVTTIPSGGEINAFVWSDHFTYNGSILLPPAVTTHAIISGTRTSGSTLTGPDSVFDTSVVLAAFPDAVITHSYQWRRHKPAVKWSGWSEDFGWLCEWIDGATSSSYTLTDDDQGCLVSRVDRIHLTFTEGGVSKTVTAISYDGSYKTSTPIARTGDLAVALPTIVTSSNISASATEGTLVLDQPALITGETRTLLHPSRSFDPYTGTAITIDSNGDILRGAGALTVGSTFSVKVRQKRGPDVVDTSVSFTVIT
Physico‐chemical
properties
protein length:1204 AA
molecular weight: 128249,34810 Da
isoelectric point:5,57462
aromaticity:0,08389
hydropathy:-0,24892

Domains

Domains [InterPro]
DC_1007
ATT
112–253
DC_1007 G3DSA:2.60.40.2700 DC_2223 DC_0572
DC_0400
STR
213–600
DC_0400 G3DSA:2.60.40.2700
IPR011050
STR
585–931
IPR011050
YP_010661201.1
1 1204
Architecture
ATT
STR
RBD
ATT 112-253 | STR 254-931 | RBD 948-1204
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010661201.1
1 1204
Domain Start End Length (AA) Confidence
N-terminal 1 236 236 0,8898
Central domain 237 465 230 0,6309
C-terminal 466 1204 738 0,2001
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-236
Central
237-465
C-terminal
466-1204

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RHph_Y68
[NCBI] 		2509787 Uroviricota > Caudoviricetes > Pootjesviridae > Trinifflemingvirus > Trinifflemingvirus Y68
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010661201.1 [NCBI]
Genbank nucleotide accession
NC_070883 [NCBI]
CDS location
range 59792 -> 63406
strand -
CDS
ATGGCACGCAAAACTATCGATGAACTTCCTGTAGCTTCTCCTGAGGCTGTTGCGACAGGAACTCTACTCATCGCGGATGAAAATGGTCTCGAGTACCGCGCAACTACCGCTATCCTCGGCGGTGTCCATCTGTTCTTCACCGACGAAGCTGACCAGACTCCTTTCGTCTTCGGTCGTCTCACGAGTCCTGGTCGAACTGTCGAAAACACTCAGGTCACACTCACTGCTACTCCTGTCGGAGGTGGTACTGCTGTCGTGAAGACTGCGACGACTGATTCTCTCGGCAACTTCACGTACGACTTCACATCGTCTCTCGCTCGCGGAGCTTCTTATACGATCGAAGCAAAGGTTGCTCCGTATCTCACTGAAACGACGACGAAGACGATCGCTGCTCTAGCTGCTCCGACTGTCTCTCTGACTGCGAGTTCAACAGGTAAGGTCGGAGATCCGATTACTGTAGACTCTCCTACTTTCAGCGGAAGTCCGACTGCTATCCGTTACCGTTATCTCCGCGGTGCATCTTACGTCATTCCTGGTGCGAACAGCAACGTTTACACTCTGCAGCCTGATGACGATGCTGACATCATCACTCCTCAGGTTCAAGCTACGAATGCTGGTGGTGACAGCCCGTGGTATTCGGCAACTGCCATCGGTCCTGTCTCGAACAAGACTTCGGTTCTCTTGACGAATCCAGTCATCTCTGGTTCGAATGCTCTCGGCAGCCGTATCGTCGTATCCGATCCTGGCTCAGCTTCGGAGAACGCCACTGTAAAGTCCGATGAATGGCAGCTCGATGGTGCAAGAATTCCGACGACGAAAGCTGCTCTTCAGCGCTACTTCGCAGGTGCAGCTGGCGGTTCTGTTCCGACTACGTATCCTGACGGTTCGAACCATCACGGCGTATCGCTCAGTTCTACGATGTATACTGGCTCGAATACGTACAGCTATTCGGTCGGCATCAGTGCAACAGAAAACGACTACATCATCTCCGCTATCGGTGCAGCAGGCGGTAACGAGGGTCCTCAGGTCTACGATCTGAAAATCAAGCATCTCAATACGAACTCCGCTCTTCGTTTCAAGATGTTCGTTGCGAAGTATCGTGCTGGTGCTCTCGTCGAAGAAATCCAGATGTCGAAGGTAGGCGTCACAGCGGGCACTGAACTCAACGAGCTCACTGCAACTGCCAACGCACTGAACTCCTGGACGGCGACTCACGATTTCGGTGAGTGGCTTGCTGGTGACGTTCTCGTCTTCCGCCAGCAGGCTCGAAACACGTCTGGATCGTCGACGAACAACTACCAGTGGGATGCACGTAACGGTGCTTCTTACGCGTATCTTCCGATCGGTGCTGTCAACGATCTCCAGAAGACTCTTTCGACGTTTACCACTCGTGCTGACATGGCTGGCAAGAAAGTCCGTCTGGCTCGTACGTATTCGAACAGAAACAACGACGTCATCGGCTATTCGAACGAAATCACTCTTGAAGCTGCAGCAACTCAGTCGAATGCTCCTGTCAACACGACTCTTCCGACTATCGTTGCTGCTTCCGATCGTTCGAACAATACATGGCAAGCAGACTTCGGTGCATGGAGCAACCAGCCTTCTAGTTTTGCAATCCAGTGGCTCGACAACGGTGCAGATATCTCTGGAGCTACACAGATGAGCTATAAGATTCCGTCGACTCTCGAAGGTCATGACGTCTCATTCCGAGTCACAGCTACGAACGATATCGGTTCGACTTCTGCTACGAGCGTTGCGAAGACTGTTCTTCCTGCTGCAGTCTTCTACAAGACTGATACCGGTAACGACTCGAACGATGGTTCGACTCCTGAACTCGCGAAGCAGACGCTGAACGGTTCTGACACTATTCCGTCCGGTTCAACTGCTATCATGCAAGGTGACTTCGGAACTCGTCTGAGACTCGGAAACAGCAGAAACTACGAAGGTACCGACACAGCCCTGACTTCGATCGGAAGCACTTCCATCTCGTACGCGATCGACCAGTACACCGACGACGGTTCTCTCGGTCGTTCGAATGTGAAGATCTCGAAGCTTCGTATCAAGTCTGGTGACCGTGCTATCAACGCACGTCAAGGCTCGAACTGGACTATCGAAGACGTCATCCTCGAAAACGTAGGCTTCACTCCTATCGGAGGCATTGCTGAAAACGCCTCTGGTATGATGTTCTACAAGAATAACGGCATCACGCTTCGTCGAGTCCAGTTCCTTCTCGTCAATTCGGATGCTCTGTTCTCCGATACGAACGACAAGGTCATCGTCGAAGATTGCTTGTTCCTGCCAGTATTCACTGCCGAAGGTGACACTATCCAGACTCGCGCAGACCGTACAGTGAACGGTTCACCAGGACCTCACCAGAAAGGCTTCATCCTTCGAGGAACTCATCTCGACATGCACTCGAGAAAGACTTCGTCTGGTAAAGGCTGCCTCGTAACGAACATGCAAGACTACGCGAACAGTCATGATAACATCTTCGAAGGAAACAACTTCGTCCATGGTACTGACGAAGGTGACAATCACGTCTTCGCTCGTAACGTCTGCTCGTACGCTCGAAAGAACACGTACTCGTTCGGTTACGGCATCGGCGGCTACGACGATCAGCCTGCTTCTCACAATCATCACGTCTACGACAACTATTGGTACGACATCGTCAGAGCTCACTCTTACACTGGCATTCCTGTCACTGGCTACACCGGTGCAAAATCAGGTCGTGTCGATATCATGGCTCATGACGAAACGGTGGTGAAGTGCACAGTCGGTGCACGTGTTGACCGTCCGACTTCTGGTAAGTTCAGAGGCTTCGTTTTCCACAACGTATCGAAACCTCTCGACAGAACTGTGACTACTATCCCTTCAGGTGGCGAAATCAATGCTTTCGTCTGGAGTGACCACTTCACGTACAACGGGTCGATTCTTCTTCCTCCGGCTGTCACGACTCATGCGATCATCTCTGGAACTCGTACTTCGGGTTCGACTCTTACAGGTCCTGACTCTGTCTTCGACACGTCTGTCGTTCTCGCAGCTTTCCCTGATGCTGTGATCACCCATTCGTATCAGTGGCGTCGTCATAAGCCTGCTGTCAAGTGGTCTGGCTGGTCTGAAGACTTCGGTTGGCTGTGCGAATGGATCGACGGTGCTACATCTTCCAGCTATACTCTGACAGACGATGATCAAGGCTGCCTCGTAAGCCGTGTAGATCGTATCCATCTCACTTTTACAGAAGGTGGTGTGTCTAAGACTGTTACGGCTATCTCTTACGACGGCTCTTACAAGACCTCGACTCCGATTGCAAGAACTGGAGATCTCGCTGTAGCTCTTCCTACTATCGTGACTTCTTCGAACATCTCGGCTTCTGCAACTGAAGGCACTCTGGTTCTCGATCAGCCTGCTCTCATCACTGGAGAAACGAGAACTCTCCTTCATCCGAGTCGTTCGTTCGATCCTTACACAGGTACGGCTATCACGATCGACTCCAACGGAGACATCTTGAGAGGTGCTGGTGCCCTAACAGTCGGAAGCACTTTCTCCGTCAAGGTTCGTCAGAAGCGAGGACCAGACGTTGTCGATACGAGCGTCAGCTTCACTGTTATTACGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
72b814e3cc0b42419f1b50930a413e398f45404d462ddfe7ae4309a16227b8ef
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2784
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Patterns of diversity and host range of bacteriophage communities associated with bean-nodulatin bacteria Vann Cauwenberghe,J., Santamaria,R.I., Bustos,P., Juarez,S. and Gonzalez,V. 1998-01 — GenBank