Protein

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Genbank accession
URY11359.1 [GenBank]
Protein name
long tail fiber
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKFMAKFGQGYVQTPFLSESNSVRFKLSIAGSCPLSTSPTYIKFQDNPLGSQVFSVGLNVRVINPTTGAVVESKSYNFSTENDATSSAFVTYMDTYASNFIFALVTNAKTNFPPEVLAWFTKAGSSVIPLAQQVLNIVDISYSAFYISGKNAIALEHIKYSNKKTSTDYSTPLDVVYDTINDIGATGFPSRTYESTDTFLSAVGGTNNEIKRMPTTSIITPLAGYKLKPGDFLYMKFQLMADADLLAQGTTRLSIRFFKSPSTSPISFKDINFDGDAGEWKIYEDYIEIPAGADGFTIYCYRTAPVGQGGLRNVIFTEVSCNGSVSKPAEFGINGIRVNYVSESLSAPDIMSLPTQSSTDTGKVFGQEFKEASE
Physico‐chemical
properties
protein length:375 AA
molecular weight: 40895,54940 Da
isoelectric point:5,08438
aromaticity:0,12267
hydropathy:-0,10987

Domains

Domains [InterPro]
DC_0912
STR
1–375
DC_0912
PS52031
LEC
22–193
PS52031
IPR039477
STR
58–128
IPR039477
URY11359.1
1 375
Architecture
STR
STR 1-375
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URY11359.1
1 375
Domain Start End Length (AA) Confidence
N-terminal 1 164 164 0,2771
Central domain 165 364 201 0,5534
C-terminal 365 375 10 0,5782
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-164
Central
165-364
C-terminal
365-375

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage ESh15
[NCBI] 		2950760 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shigella sp.
[NCBI] 		625 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URY11359.1 [NCBI]
Genbank nucleotide accession
ON528725.1 [NCBI]
CDS location
range 129545 -> 130672
strand +
CDS
ATGGAAAAATTTATGGCTAAGTTTGGACAAGGATACGTCCAAACGCCATTTTTATCGGAAAGCAATTCAGTACGATTTAAATTAAGCATAGCGGGCTCTTGTCCGCTATCAACATCTCCTACTTATATTAAGTTCCAAGATAATCCACTTGGGTCTCAGGTTTTTTCTGTTGGATTAAATGTTCGTGTAATAAATCCTACAACAGGTGCAGTAGTTGAATCTAAGTCATATAATTTCTCTACTGAAAACGACGCCACGTCAAGTGCATTTGTTACTTACATGGACACATATGCTTCTAATTTTATATTTGCTCTTGTTACTAACGCTAAAACAAACTTTCCTCCTGAAGTTCTTGCATGGTTTACTAAAGCTGGAAGTTCTGTTATTCCATTAGCACAACAAGTTTTAAATATAGTGGACATTTCTTATTCGGCATTTTATATTTCCGGTAAGAATGCTATAGCACTAGAACATATTAAGTATAGTAATAAGAAAACTTCAACTGACTATAGTACACCACTTGATGTTGTGTACGACACTATCAATGATATTGGTGCTACCGGCTTCCCTAGTCGTACGTATGAATCGACAGACACATTTTTATCTGCTGTTGGTGGTACTAATAATGAAATTAAAAGGATGCCTACAACGTCCATTATTACACCTCTCGCTGGGTATAAATTGAAGCCTGGAGATTTCCTTTATATGAAATTCCAACTAATGGCCGATGCTGATTTGTTAGCACAAGGGACGACACGACTTTCTATTCGTTTCTTTAAATCTCCTTCTACTTCACCTATTTCATTTAAGGATATAAACTTTGATGGGGATGCAGGTGAATGGAAGATATATGAAGACTACATAGAAATTCCTGCTGGTGCTGACGGGTTCACGATTTATTGTTATCGTACAGCTCCAGTCGGGCAAGGCGGATTAAGAAACGTTATATTCACTGAAGTATCATGTAATGGAAGCGTTTCAAAACCTGCTGAGTTTGGTATAAATGGTATTCGTGTAAATTATGTTTCAGAATCTTTAAGTGCCCCGGACATAATGTCATTACCTACTCAATCTTCAACCGATACTGGTAAGGTATTTGGACAAGAATTTAAAGAAGCATCAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f0ce25b69334f192cb204012a7bcd67aed08e94029d606c1150a69b204ccbd0
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6524
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Design of a bacteriophage cocktail active against Shigella species and testing of its therapeutic potential in Galleria mellonella Filippov,A.A., Su,W., Kevorkian,R.T., Sergueev,K.V., Srijan,A., He,Y., Lurchachaiwong,W., McGann,P.T., Ellison,D.W., Swierczewski,B.E. and Nikolich,M.P. — — GenBank