Protein

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Genbank accession
AGH56454.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSQLNVDRVVSLSGGGGTAQFQLESSGNFNFDSGTLYVDSANNEVGINTTNPRSNLDIAGTGSVVVPVGTTAQRPGAPVEGMFRYNSEERQFEGYSLNSGTNQVEWGAIAGSGGGTPNQSADRYSTDYSVGAVLKSDGTEAYWSFEGVLSDWGMARIWTHGYVGGGYQSGSPWRNVNRTVHATDTSTNLGDTLDRSGAYMAGSFHDTRHFFHSMENTYRGSSNYTSGFSMTSESGITHQNSWDMTVNRASMGSFQDYIHAGGYSYLQGGGSARTDAFNLSTEVMRTSGFPPNHGDGGDDPTWGGNSRTKGWYKRSGTRQGFTWKTESWVTWNHGPGGDGWKKILGTMLGHMYVGTGNNAQNGNQKCDDTTGIQVRGLNFGNMGEENFEIGMRKGYCLGNYNGAQNNNTFKVNYATDGHTNLGGSSPPSGHGGMSSAHCSSASAVSGVNTDGSQAYNYGTTIPNF
Physico‐chemical
properties
protein length:464 AA
molecular weight: 49528,81150 Da
isoelectric point:5,68358
aromaticity:0,10991
hydropathy:-0,68470

Domains

Domains [InterPro]
DC_0841
STR
1–286
DC_0841
AGH56454.1
1 464
Architecture
STR
STR 1-286 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56454.1
1 464
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,8731
Central domain 11 209 200 0,0497
C-terminal 210 464 254 0,9676
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-464

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56454.1 [NCBI]
Genbank nucleotide accession
HQ634190 [NCBI]
CDS location
range 144651 -> 146045
strand +
CDS
ATGTCCCAACTTAATGTAGATAGAGTAGTTTCTTTAAGTGGTGGTGGCGGAACTGCACAATTCCAACTGGAATCTAGTGGCAATTTTAACTTTGATTCGGGCACGCTGTATGTCGATAGTGCGAATAACGAAGTTGGTATTAATACTACAAATCCGCGATCAAACTTAGATATTGCTGGAACTGGTAGTGTTGTTGTTCCTGTTGGAACGACTGCACAGCGCCCTGGAGCACCCGTAGAGGGTATGTTCCGATATAATTCAGAAGAACGACAGTTTGAGGGATATTCCTTAAATAGTGGAACTAATCAGGTTGAATGGGGTGCTATTGCTGGTAGTGGTGGAGGAACACCCAACCAATCTGCAGATAGATATAGCACTGACTATTCTGTTGGCGCTGTTCTTAAATCTGACGGAACTGAAGCATATTGGTCTTTTGAAGGTGTCCTAAGTGATTGGGGCATGGCAAGAATTTGGACCCATGGATATGTTGGTGGTGGGTATCAAAGTGGTTCGCCATGGAGAAACGTTAACAGAACTGTTCACGCTACAGATACATCAACGAACTTAGGTGATACTCTCGATAGATCTGGTGCTTATATGGCAGGATCTTTCCATGATACTAGACACTTCTTCCACTCTATGGAGAATACTTATAGAGGTTCTTCTAACTATACGTCTGGTTTCAGTATGACCTCTGAATCTGGTATCACCCACCAGAACTCTTGGGATATGACTGTAAACCGTGCATCAATGGGTTCATTCCAAGACTACATTCATGCGGGCGGTTATTCTTATCTACAGGGTGGTGGTAGTGCTAGAACTGATGCATTTAATCTCTCTACAGAGGTTATGAGAACGTCTGGATTTCCTCCTAACCATGGTGATGGTGGTGATGACCCCACATGGGGTGGTAACTCCAGAACAAAAGGATGGTATAAGCGTTCTGGCACACGTCAAGGATTCACTTGGAAGACTGAATCTTGGGTTACTTGGAACCATGGACCTGGTGGTGATGGATGGAAGAAAATCCTCGGTACTATGTTAGGTCACATGTATGTTGGAACTGGTAACAACGCACAGAATGGTAATCAAAAGTGTGATGATACAACAGGTATTCAGGTTAGAGGTTTGAACTTCGGTAACATGGGTGAGGAAAACTTTGAAATTGGAATGAGGAAGGGTTATTGCTTGGGTAACTATAATGGTGCTCAGAATAACAACACCTTCAAGGTGAACTATGCAACCGATGGTCACACAAACCTTGGTGGATCTTCACCTCCGTCTGGTCATGGTGGTATGAGTTCCGCTCACTGCTCCTCTGCATCTGCTGTATCGGGTGTTAACACCGATGGTTCTCAGGCATACAATTACGGCACAACTATTCCTAACTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
ffd923aedfc229adf5292505f13650ea3f86b729da49c3f74f4ece5ec09ba75c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3764
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank