Protein

View in Explore

Genbank accession

WVO01608.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence Phold

Probability 1,00

Evidence RBPdetect2

Probability 0,96

Protein sequence

MYSIKTDLDVSGNGTINKDLLVKGNAVVKGDLKVEGTVDFAHATFTQIDVSGTANLKDITSTGTAALTTVSVSGNTTLGDASTDTLNVKATSTFDAPVTLNGNVTQTTGTAAFKATSVDSLTVAGESQLNGDLVMGTGTKATMKDLETDTLKVNGDSVIGGTLNVTGASTFGDVVINGTLSGNYTMDAGNFNSIKVAQLSDLNNVNIKGTTTITGNITASNSTMNLKHLYMRGADAIIDFDYADPSRPTDIKSSVEPYQISSNYFLSKNIKSNAAEIGVVGGTEGLHAIGRANIDYLNITGNSTIGDQTQLQVAGKSIFTGKTTVGDLEITGSVTGLSFSDLNVDSLTVSGLSQLQGGVSVGGNITGSTTSIASFSTITVRDGTGGNHGIIQFAYSDENRPTDIKSSIEPYQISSNNFLGKELKTNSAEIGVVGGTEGLHAIGKATIDYLKIAGNSTIGTASPQLEVTGKSILGDVDFTGTVTGLTVDVSGQDLTPNSVTTAAGVVGETLESKTTTKVGTNLTVGGTASVTGNASFGGDVNVTGQTVTVKDLVVTGSVTGVTAEANVDGLDIAPNSVTSTTYVKSATLEVSGASTLQDVTVKGTISGDAGAAVQVNKLNSAGTITATGNISAPSAQFTGSDVALDVTNNATIGGTLNVTGKTTVGDLTVTGTLIPGNLDLSQTDIASQSITTTGNANIGGDLVVTGTVDLSSADVSVKSLTTPGIVTSTDLVNASKLPVLNSNTITATEIDATDLTVTGQSVVKDLSASGKVTAGSVQTATITNADGITLSNNTTASGDLTVNGTLVLAGALDLSSVDIEAKSIHTTENASFDGNLSVGGTVDLTGADVTAISFTASDTVKTNTFPVLSSTTATIANATVTDLNATTSKVGTLTATGNTTLAGLTAGASVLESATVTGDATINGNITSTNSTVAIDKNTSVTGDLAVSGTLTAGVIDLSTTDVSVKSLDSLGNAHVAGDLTVDGQFDLSATNLQAASLASTGNTTVGADLVLTTGIITGSPKISGTLNVTGATTLAGLNAGSSTLNSATVTTTLNVSGATTLADLSATSATAGTLSTTGKATLNSAEIATNAVVKGNLTIEGILLPQGGLDLTGADIEANSITLAAGASVGSTLNVTGLSTLAGVNSGNHSITGTLNVSGESKLSDVSVGNNLTVTGTTTLTDNLTVNGANTTLKKTKTDNLHVGTLTWDEAKYIAEIGGDVHISGNIDVDGLITADLDLTGRSIAPRQVTTSADVTVGTTLNVIGQSTMASAIIGDVGSVNNNLQINGNTVCTGDFTVQGKIIGTLDQSTSDVVAKSVTASTFVKAATAEITSTSSFGGKVTASAGVSVTGGTTSDTITTTGLATLDSAKVTTSLGVTGDTTVGGTLGVTGETTLAATTISSLTVSGESGFTGKATFVDLESTGSITAKDVTITGTLNTDIADLVTSSVTTSKYEVKAAASEVVGATWTPDGSSNVYNITLSEPTLDIPTFPYRQGYAGSWFIYVTQPAAGGCTINWVPPFGLIGDSKINEAANSVSICQVVYSGVGDKLDVFIAQRNL

Physico‐chemical properties

protein length:	1560 AA
molecular weight:	155779,18100 Da
isoelectric point:	4,28858
aromaticity:	0,03269
hydropathy:	0,12519

Domains

Domains [InterPro]

DC_0092
STR
1–171

DC_0092 DC_0092 DC_0092 DC_0931

DC_0092
STR
150–332

DC_0092 DC_0062 DC_0092 IPR058970

WVO01608.1

1 1560

Architecture

STR

RBD

STR 1-791 | STR 861-1208 | RBD 1209-1560

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0092	STR	DC_0092	1	171	Novel HMM	DC_0092	Central	Low	Positional only	72 proteins / 72 hits
DC_0092	STR	DC_0092	150	332	Novel HMM	DC_0092	Central	Low	Positional only	72 proteins / 72 hits
DC_0092	STR	DC_0092	308	535	Novel HMM	DC_0092	Central	Low	Positional only	72 proteins / 72 hits
DC_0062	STR	DC_0062	508	791	Novel HMM	DC_0062	Central	Low	Positional only	50 proteins / 50 hits
DC_0092	STR	DC_0092	861	1051	Novel HMM	DC_0092	Central	Low	Positional only	72 proteins / 72 hits
DC_0092	STR	DC_0092	1014	1208	Novel HMM	DC_0092	Central	Low	Positional only	72 proteins / 72 hits
DC_0931	RBD	DC_0931	1160	1560	Novel HMM	DC_0931	C-terminal	Low	Positional only	65 proteins / 65 hits
IPR058970	RBD	DC_0552	1469	1549	InterPro cluster	Putative phage tail fibre, C-terminal domain	C-terminal	Low	Positional only	292 proteins / 292 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage PHA46 [NCBI]	3117424	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028 [NCBI]	1299114	Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Genbank protein accession

WVO01608.1 [NCBI]

Genbank nucleotide accession

PP191103.1 [NCBI]

CDS location

range 194959 -> 199641
strand -

CDS

ATGTATTCTATTAAAACTGATCTAGACGTTTCTGGGAATGGTACAATCAATAAAGATCTACTTGTTAAAGGTAATGCTGTCGTTAAAGGTGATCTTAAAGTTGAAGGTACGGTGGACTTTGCACATGCAACGTTTACCCAAATTGACGTTTCTGGAACAGCTAACCTTAAAGATATTACATCTACTGGAACAGCAGCACTAACTACTGTCTCAGTATCCGGTAATACCACATTAGGCGATGCAAGTACAGATACACTAAATGTAAAAGCCACAAGCACATTTGATGCACCTGTGACTTTAAACGGTAACGTCACACAAACTACCGGAACTGCTGCATTTAAAGCAACTTCTGTTGATTCATTAACCGTAGCTGGTGAATCTCAATTAAACGGTGACCTAGTAATGGGAACTGGTACAAAAGCTACGATGAAAGATTTAGAAACTGATACATTAAAAGTAAATGGTGATTCAGTAATCGGTGGAACACTAAATGTTACAGGTGCAAGTACCTTTGGTGATGTTGTTATTAACGGTACACTTTCAGGTAACTACACAATGGATGCTGGTAACTTTAACAGCATTAAAGTAGCACAATTAAGTGATCTAAACAACGTAAACATTAAAGGTACTACAACTATTACCGGTAATATTACCGCATCTAATAGTACTATGAACCTAAAACACCTATATATGCGTGGTGCTGATGCTATTATCGATTTCGATTATGCTGACCCATCTCGCCCAACTGATATTAAATCAAGTGTTGAACCATATCAAATTAGTTCTAACTATTTCCTAAGTAAAAATATCAAATCTAATGCTGCTGAAATCGGTGTTGTTGGTGGTACTGAAGGACTACATGCTATCGGTAGAGCAAACATTGATTATCTAAACATTACTGGTAACAGTACTATTGGTGATCAAACACAACTACAAGTTGCTGGTAAATCAATTTTCACTGGTAAAACAACTGTTGGTGATTTAGAAATTACTGGTTCTGTAACAGGTCTATCCTTTAGTGATCTAAATGTAGATTCTCTAACTGTTTCTGGTTTATCTCAACTACAGGGTGGTGTATCCGTAGGTGGAAACATTACTGGTTCTACAACCTCCATCGCATCATTCAGTACTATTACTGTTCGAGATGGCACTGGTGGTAATCACGGTATTATTCAATTTGCTTATTCTGATGAGAATCGCCCAACTGATATTAAATCAAGTATTGAGCCATATCAAATTAGTTCTAACAACTTCCTTGGTAAAGAACTAAAAACTAATTCCGCTGAAATCGGTGTTGTTGGTGGTACTGAAGGTCTACATGCTATTGGTAAAGCAACTATTGATTACTTAAAAATTGCTGGTAATAGTACAATTGGTACTGCATCACCACAATTGGAAGTAACTGGTAAGTCAATTCTTGGTGATGTTGATTTCACTGGTACTGTAACTGGTCTAACTGTTGATGTTTCTGGTCAAGACCTAACACCAAACTCAGTAACAACTGCTGCTGGTGTTGTTGGTGAAACTCTAGAATCTAAAACTACAACTAAAGTTGGAACCAACCTAACTGTAGGTGGCACTGCATCTGTAACCGGAAATGCCTCTTTTGGTGGCGATGTAAATGTAACTGGTCAAACTGTAACCGTCAAAGATTTAGTAGTAACTGGTTCCGTTACTGGTGTAACTGCTGAAGCTAACGTAGATGGTCTAGATATTGCTCCTAATTCTGTAACTTCTACTACCTATGTTAAATCAGCAACACTAGAAGTTTCCGGTGCAAGTACATTACAAGACGTGACAGTAAAAGGTACTATTAGTGGTGATGCTGGGGCTGCGGTTCAAGTTAATAAACTAAATTCCGCTGGTACTATTACAGCAACTGGTAACATTTCTGCACCGTCTGCACAATTTACTGGTTCTGATGTAGCACTAGACGTTACAAATAACGCAACAATCGGTGGTACTTTAAATGTAACTGGTAAAACAACTGTTGGTGATCTAACAGTAACTGGAACTCTCATTCCGGGTAATCTTGATCTATCACAAACTGATATTGCATCACAATCTATTACTACTACTGGTAATGCAAATATCGGTGGCGATTTAGTTGTTACTGGTACTGTAGATTTATCTTCTGCTGATGTTAGTGTTAAATCCTTAACTACTCCGGGTATTGTAACTTCAACTGATTTGGTTAATGCTAGCAAACTACCTGTATTAAACTCTAATACAATAACTGCAACCGAAATTGATGCAACAGACCTTACCGTAACTGGTCAATCAGTTGTTAAAGATCTATCTGCAAGTGGTAAAGTTACTGCTGGTTCAGTTCAGACTGCAACTATTACAAATGCTGATGGTATTACATTATCAAACAATACTACCGCTTCTGGTGATCTAACTGTTAATGGTACTCTAGTTTTAGCTGGTGCTCTTGATTTAAGTTCTGTAGATATTGAAGCAAAATCAATTCATACAACTGAAAACGCATCATTCGACGGTAACCTATCAGTCGGTGGAACAGTTGACTTAACTGGTGCTGATGTAACAGCTATTAGTTTCACTGCATCTGATACTGTTAAGACTAATACATTCCCTGTATTATCTTCAACTACTGCAACAATTGCAAATGCAACTGTCACAGATTTGAATGCAACAACTTCTAAAGTTGGAACATTAACTGCAACTGGTAATACCACTCTTGCTGGTCTCACTGCTGGTGCAAGTGTGTTAGAATCTGCAACTGTAACTGGTGATGCAACAATCAATGGTAATATTACATCAACTAATAGTACTGTTGCAATTGATAAAAATACTTCAGTAACTGGCGATCTAGCCGTGTCTGGTACATTAACTGCTGGTGTTATTGATTTAAGTACAACTGATGTATCTGTTAAATCTCTAGATTCTCTAGGTAATGCACACGTTGCTGGTGATTTAACCGTTGATGGTCAATTCGATCTAAGTGCAACTAATCTACAGGCTGCATCTCTAGCAAGTACCGGGAATACTACAGTTGGTGCAGATCTAGTACTAACAACTGGAATTATTACTGGTTCTCCAAAAATTAGTGGCACATTAAATGTAACTGGTGCAACTACACTTGCTGGTTTAAATGCTGGTTCTAGTACTCTAAATTCTGCAACTGTAACTACTACATTAAATGTATCTGGTGCAACTACACTTGCTGATCTATCAGCTACTTCAGCAACTGCGGGTACACTAAGCACAACTGGTAAAGCAACTCTTAATTCTGCGGAAATTGCAACAAACGCGGTAGTTAAGGGAAATCTAACAATTGAAGGTATCCTACTACCTCAAGGTGGTTTAGACCTAACTGGTGCAGATATTGAAGCAAATAGTATTACACTAGCTGCTGGTGCATCTGTTGGCTCAACCTTAAATGTTACAGGTCTAAGTACACTAGCTGGTGTTAACTCAGGTAATCATTCTATTACTGGAACTTTAAATGTTTCTGGTGAAAGTAAACTAAGTGATGTTTCTGTTGGTAATAACTTAACTGTTACGGGTACTACTACTCTAACTGATAACTTAACAGTAAACGGTGCAAACACCACATTGAAGAAAACTAAAACTGACAATCTACATGTTGGTACTCTAACTTGGGATGAAGCGAAATATATTGCTGAAATTGGCGGTGACGTCCATATTAGTGGTAATATCGATGTTGATGGTTTAATCACTGCTGACCTTGACTTAACTGGTCGTTCTATTGCACCACGTCAGGTTACAACATCTGCTGATGTAACTGTTGGTACAACTTTAAATGTTATCGGTCAAAGTACTATGGCATCTGCTATCATTGGTGATGTTGGTTCTGTGAATAACAACCTACAAATTAATGGTAATACTGTATGTACTGGTGACTTCACAGTACAAGGTAAAATTATCGGTACACTAGACCAATCAACATCTGACGTTGTTGCTAAGTCTGTTACTGCTTCTACTTTTGTTAAAGCCGCAACTGCTGAAATTACTTCTACATCTTCATTTGGTGGTAAAGTGACTGCTTCTGCTGGTGTTAGTGTAACAGGTGGTACAACCTCAGATACTATTACTACCACAGGTCTAGCAACACTAGATTCTGCCAAAGTAACTACTTCACTTGGTGTTACTGGTGATACTACTGTTGGTGGTACTTTAGGCGTTACTGGTGAAACTACATTAGCTGCAACTACCATTAGTTCACTAACTGTAAGTGGTGAAAGTGGATTTACTGGTAAAGCAACGTTTGTAGATCTTGAAAGTACTGGTTCTATTACTGCTAAGGATGTAACCATTACTGGTACTCTAAATACTGATATTGCTGATCTAGTAACAAGTTCTGTAACAACTAGCAAATACGAAGTTAAAGCCGCAGCGTCTGAAGTTGTTGGTGCAACATGGACACCTGATGGTTCTAGTAACGTGTATAACATTACTTTATCTGAACCAACATTGGATATTCCAACATTCCCATATCGTCAAGGATATGCTGGTTCTTGGTTCATTTATGTTACTCAGCCAGCAGCGGGCGGTTGCACAATAAATTGGGTTCCACCGTTTGGTCTAATTGGTGATTCTAAAATCAACGAAGCAGCAAACTCCGTATCCATCTGTCAAGTAGTTTACAGTGGTGTTGGTGATAAACTCGATGTGTTCATTGCACAACGTAATCTATAA

Genome Context

Tertiary structure

PDB ID

c19ef7b52133eb0f5b3f0dae23462deeff3e8a30c4ff271942b13ed88a533c18

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,5206

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Characterization and efficacy of Salmonella phage PHA46 cocktail in the control of Salmonella Newport and Typhimurium internalized into cherry tomatoes	Arista-Regalado,A.D., Viera-Segura,O., Aguilar-Montes de Oca,S., Hernandez,L., Gonzalez-Aguilar,D. and Barba-Leon,J.	2024-07	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature