Protein

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Genbank accession
YP_010083130.1 [GenBank]
Protein name
BppU family baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTITFNVEKSLFSMIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSHITDLENKAQSYSRTFDERKRYMDEKHEAFKQSVNSGGLVTSGSTSNWQKSKITKDDGKITQITGFDFNNPEQRVGDSTQFIYVSQAINYPRGVSTNGIVEYLVVTSDYKRMTYRPNGTNKVFVKRKEAGSWSDWSELALNDYNTPFETVQNAQSKANTAESNAKLYTDDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGNPFGGGKISLNPSNLPDNDGNGGGVYEFGLTKSSRTSLTISNDVYFDLGSQRGSGANANRGTINKIIGVRK
Physico‐chemical
properties
protein length:488 AA
molecular weight: 54190,91200 Da
isoelectric point:5,56854
aromaticity:0,09221
hydropathy:-0,48443

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
6–130
G3DSA:2.60.40.3350 cd19958 DC_0151
IPR018913
ATT
6–152
IPR018913 Coil
DC_1216
STR
47–383
DC_1216
YP_010083130.1
1 488
Architecture
ATT
STR
RBD
ATT 6-152 | STR 153-383 | RBD 384-488
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage SH-St 15644
[NCBI] 		2066503 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010083130.1 [NCBI]
Genbank nucleotide accession
NC_055038 [NCBI]
CDS location
range 19220 -> 20686
strand +
CDS
ATGAGTAATTTAGAGAAATCTGTAGCTATAAATTTAGAAAACACAGCGCATTATGAAAATATTTCAAATCTAGATATAACTTTTAGAACAGGAGAGAGTGATTCTTCTGTTCTTCTTTTTAATATCATTAAAAATAATCAACCGTTATTATTGAGTGAAGAAAATATCAAAGCACGAATAGCGATTCGAGGTAAAGGAGTCATGGTAGTTGCTCCACTAGAAATATTAGATCCATTTAAAGGTATTTTAAAATTTCAATTACCTAATGATGTAATTAAACGAGATGGAAGTTATCAAGCTCAAGTTTCGGTTGCAGAATTAGGTAATTCAGACGTGGTAGTTGTCGAGAGAACTATCACATTTAACGTTGAAAAAAGTTTGTTTAGCATGATTCCATCTGAAACAAAATTACACTATATTGTTGAATTTCAGGAATTAGAAAAAACTATTATGGATCGTGCGAAAGCAATGGACGAGGCTATAAAAAATGGTGAAGATTATGCGAGTCTGATTGAAAAAGCTAAAGAAAAAGGTCTATCAGATATTCAAATAGCAAAATCTTCAAGTATAGATGAATTAAAGCAACTTGCTAATAGCCATATAACCGATTTGGAAAATAAAGCTCAGTCTTATTCAAGAACATTTGATGAGCGAAAGCGATATATGGATGAGAAACATGAGGCTTTCAAGCAGTCAGTGAATAGCGGCGGTTTAGTCACAAGTGGTTCAACTTCAAATTGGCAAAAATCTAAGATTACTAAAGACGACGGTAAAATAACACAGATTACTGGATTTGATTTTAATAATCCAGAACAAAGAGTAGGAGATTCAACCCAATTTATTTACGTCTCACAAGCCATAAATTATCCAAGAGGCGTAAGCACTAATGGTATTGTCGAATATTTAGTAGTAACTTCCGACTACAAACGTATGACATATCGTCCAAATGGTACAAATAAAGTATTTGTTAAGAGAAAAGAAGCAGGTTCTTGGTCTGATTGGTCAGAATTAGCCCTTAATGATTACAATACGCCTTTTGAAACTGTTCAAAACGCGCAATCAAAAGCTAATACGGCTGAAAGCAACGCCAAACTATACACAGATGACAAGTTTAATAAAAGATATTCAGTTATTTTTGATGGGACGGCAAATGGCGTTGGCTCAACATTATATCTTAATGAAAGTTTAGATCAATTTATTTTGTTAATTTTTTATGGAACTTTTCCAGGGGGAGATTTTACTGAGTTTGGCAACCCCTTTGGTGGCGGAAAAATTTCATTGAACCCATCAAATTTACCGGATAATGATGGTAATGGTGGAGGCGTTTATGAGTTTGGATTAACTAAATCTAGTCGTACATCTTTAACGATATCGAACGATGTTTATTTTGATTTAGGAAGTCAAAGAGGTTCTGGTGCAAATGCAAATAGAGGAACAATCAACAAAATTATAGGAGTGAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1f328701c051ee9d9d9961649d745fac7d5a804328ce00f54c3851330582d2e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of A Novel Phage Targeting Methicillin-Resistant Staphylococcus aureus In vitro and In vivo Ji,J., Liu,Q., Wang,R., Luo,T., Guo,X., Xu,M., Yin,Q., Li,M. and He,P. — — GenBank