Protein

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UniProt accession
K4F6H2 [UniProt]
Protein name
RNA ligase 1 and tail fiber attachment catalyst
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
Protein sequence
MSKTKKIFDDLMNLTSVNDAFMWKDFESTAGGIFRIFSYRLASYSDFLAPSALECRGTMFQVSETGEFIGMASRTPMKFFNAYENPFTMYDKSTLSSEIAVVMDKLDGSIISTFMDVDYEVRTKSHASLNSDHAKNSTAMLHNDRDLYNEVHYAESMGYTVNMEYTSPEYRIVLPYQEDNLTVLNLRHRMTGELLIGHRLKGFSPLLYSRSVFAKYGEIDPTFPMKETLYDSIEATRSMQDIEGFVLILKDGRMCKIKTDWYCALHFTKDSINVDSRLYEAIITGASDDLKQMFSTDLYSIKKIEKMEQLVFSCYNKLVHDSESFYEANKHLDRKEYALKVQSDVPNELGKPGIAFSLYNSKPVDYKAMMLKYMKDVLVNFEV
Physico‐chemical
properties
protein length:383 AA
molecular weight: 44141,92370 Da
isoelectric point:5,47907
aromaticity:0,12272
hydropathy:-0,31880

Domains

Domains [InterPro]
DC_1201
ATT
2–53
DC_1201 IPR019039 IPR049042
IPR012648
Unmapped
6–372
IPR012648
G3DSA:1.10.3550.20
RBD
260–381
G3DSA:1.10.3550.20
K4F6H2
1 383
Architecture
ATT
STR
RBD
ATT 2-53 | STR 54-262 | RBD 263-381 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage vB_CsaM_GAP32
[NCBI] 		1141136 Uroviricota > Caudoviricetes > Mimasvirus >
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFC21528.1 [NCBI]
Genbank nucleotide accession
JN882285 [NCBI]
CDS location
range 42001 -> 43152
strand +
CDS
ATGTCTAAAACAAAAAAGATTTTTGATGACCTGATGAATCTTACTTCTGTGAATGATGCGTTCATGTGGAAAGATTTTGAAAGTACTGCTGGTGGTATTTTTCGTATTTTCTCTTATCGCCTGGCAAGTTATTCCGACTTCTTAGCACCGAGTGCATTGGAATGTCGCGGTACTATGTTTCAGGTAAGCGAAACTGGTGAATTCATTGGTATGGCTTCACGTACACCGATGAAGTTTTTTAATGCATATGAAAATCCATTCACTATGTATGATAAAAGTACTTTAAGTTCTGAAATTGCAGTTGTGATGGATAAACTTGATGGTTCCATTATTAGTACTTTTATGGATGTTGATTATGAAGTACGCACTAAATCACATGCATCACTGAATTCAGATCATGCGAAAAATAGTACTGCAATGTTGCATAATGATCGTGATTTGTACAATGAAGTTCATTACGCAGAAAGCATGGGTTATACGGTGAATATGGAATACACTTCACCTGAATATCGTATTGTTCTTCCGTACCAGGAAGATAATTTAACAGTACTGAATTTGCGTCATCGCATGACTGGTGAACTTTTAATTGGTCACCGTCTGAAGGGCTTTAGTCCGTTGCTTTACAGCCGTTCTGTATTTGCTAAGTACGGCGAAATTGATCCAACGTTTCCTATGAAAGAAACTTTGTATGATAGTATTGAAGCAACTCGTTCAATGCAGGATATTGAAGGTTTTGTTTTAATCCTAAAAGATGGACGTATGTGTAAGATTAAAACTGACTGGTATTGTGCACTGCACTTTACTAAAGACAGCATTAATGTTGATTCTCGCTTATATGAGGCAATCATTACTGGTGCGTCAGACGATCTTAAACAAATGTTTAGTACTGATCTGTACTCCATCAAGAAGATTGAAAAAATGGAACAGCTTGTTTTTTCATGCTATAATAAGCTTGTACATGATAGTGAGTCGTTTTACGAAGCGAACAAACATCTTGACCGTAAAGAATATGCTTTAAAAGTTCAATCAGACGTACCTAACGAACTTGGTAAGCCTGGTATTGCGTTCAGTCTTTATAACTCTAAGCCCGTAGATTATAAAGCGATGATGTTAAAATACATGAAGGACGTTCTTGTAAACTTCGAAGTTTAA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0005524 ATP binding Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0046872 metal ion binding Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0003972 RNA ligase (ATP) activity Molecular Function IEA:InterPro (UniProt)

Tertiary structure

PDB ID
7b665d6b4ca6d5cf1ea796e40fc8afdb7d0777b1ab378a54f595b83b8102d1f6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9313
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
— — 25010279 PubMed