Protein

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Genbank accession
XYM57672.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVVKNEYPVNGGNTGWSRSDVISAMENAFSGLDSGAGWHSGTAKTGVPTTCFASGDTGSPNATNPSNSNWQYSAQATTQPNYRAYRYFDVTNSGSGAYTIKRKGRNDNYIYSDSQSGLESAVRFYDHELNTGDAVVWNRTDVPELTQGQTYYVISVGNEDWFQIATSPTNATNGVRVTFPNNYNIGTDTNGAWLVELGNNPTITCRQGDRLYFDVNASGHPFYVQDTVGAYDVNRVINNTNFNDTSYRDFPSNQGIESGQFEWELDVWAQGDYYYVCQLHSGMNGIIRVLPSQAAYYAYSTAPYWDYTVSGASVGAGRTDLNLRIRRYGVQSTYVGHILGIEILNEAEGWQNDDVFTIPGGSIGGASPANDVSFGVNSRTTQQQNDRTGVASIVVTDVGGNGNGGFYQRLGTNSQPGAILRIESDANKTYGVTYYGFRIDNDYEMHIGSGSDWRFLGYNPGSSTLTHNGVFDGERGLDYSSVFGGPPSMNDDANHYEHFSFTTSTTPTSYPLKIVTYQAQSPQDTNFVVINFVYTINGVETTAFTFTPLKGTNIGNGIWDLDNVYNGSYLTYEYPTTESVSIVTHMPNERYTSDEEEQGSAIRREAFYGYFRDATEDYTNYWESRYINNIFRHLGDNSTYITGYYRNSTYDDYTVNFQNSTLGNRNDAITTYRVNSGADYYRPFKGLPINHNMMPCPYYLPDDFVMIQFAVTPGATAFRPGDTITVSGSEVYEIIRVSYTTNQLGLDNINSNTSKGIAFCARTT
Physico‐chemical
properties
protein length:765 AA
molecular weight: 84829,09760 Da
isoelectric point:4,66679
aromaticity:0,13725
hydropathy:-0,54824

Domains

Domains [InterPro]
DC_0856
STR
4–765
DC_0856
cd00920
Unmapped
190–289
cd00920
IPR008972
STR
200–305
IPR008972
IPR008972
STR
201–299
IPR008972
XYM57672.1
1 765
Architecture
STR
STR 4-765
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYM57672.1
1 765
Domain Start End Length (AA) Confidence
N-terminal 1 12 12 0,7352
Central domain 13 286 275 0,5291
C-terminal 287 765 478 0,4906
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-12
Central
13-286
C-terminal
287-765

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Sf-CH1b
[NCBI] 		3413213 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYM57672.1 [NCBI]
Genbank nucleotide accession
PV340850 [NCBI]
CDS location
range 174202 -> 176499
strand +
CDS
ATGGCAGTAGTCAAGAATGAATATCCAGTAAACGGTGGAAACACTGGATGGTCAAGATCGGATGTGATCTCTGCCATGGAGAATGCTTTCTCTGGTTTGGATAGTGGTGCTGGTTGGCATAGTGGAACTGCTAAGACTGGAGTACCAACAACATGTTTTGCATCTGGAGACACTGGAAGTCCCAATGCAACAAATCCTAGCAATTCTAATTGGCAGTATTCAGCACAAGCTACAACTCAACCAAATTATAGAGCTTACAGATATTTTGATGTAACTAATAGTGGATCTGGTGCATATACTATTAAGAGAAAAGGTAGGAATGATAACTACATCTACAGTGACAGTCAGTCAGGATTGGAAAGTGCAGTTAGGTTTTATGATCATGAGTTAAACACGGGCGATGCAGTTGTATGGAATAGAACTGATGTTCCAGAATTAACTCAAGGACAAACATATTATGTTATCTCTGTTGGAAATGAAGATTGGTTTCAGATTGCAACTAGTCCTACGAATGCAACTAATGGTGTAAGAGTCACATTCCCAAATAATTACAATATTGGAACTGATACTAATGGTGCTTGGCTTGTAGAGTTGGGAAATAATCCAACGATTACTTGTAGACAAGGAGATAGACTTTACTTTGATGTGAATGCATCTGGGCATCCTTTCTATGTTCAGGACACAGTTGGTGCATATGATGTCAATAGAGTTATTAATAATACAAATTTTAATGACACTAGTTACAGAGACTTCCCTTCTAATCAAGGTATTGAGTCGGGTCAATTTGAATGGGAACTTGATGTATGGGCACAGGGAGACTATTATTATGTCTGTCAGTTACACTCTGGTATGAATGGAATCATTAGAGTGTTGCCATCACAAGCAGCGTATTATGCTTATAGCACCGCTCCATATTGGGACTATACAGTTTCTGGTGCAAGTGTGGGTGCTGGCAGAACAGATTTAAATCTTAGAATTAGAAGATATGGTGTACAATCTACTTATGTGGGTCACATATTAGGAATTGAAATTTTAAATGAAGCAGAAGGATGGCAAAACGATGATGTATTTACGATCCCTGGTGGATCTATTGGTGGAGCATCTCCTGCTAATGATGTTAGTTTTGGTGTAAACAGTAGAACTACACAACAACAAAATGATAGAACAGGTGTTGCAAGTATTGTAGTTACTGATGTTGGTGGAAATGGTAATGGTGGTTTCTATCAAAGACTTGGTACTAATTCACAACCAGGAGCAATTCTAAGAATTGAAAGTGATGCAAACAAAACATATGGTGTTACATATTATGGATTTAGAATTGATAATGATTATGAAATGCACATTGGATCTGGAAGTGACTGGAGATTCCTAGGATATAATCCTGGTTCTTCTACTTTGACTCACAATGGTGTATTTGATGGTGAAAGAGGATTGGATTATAGTAGCGTATTCGGTGGTCCTCCATCTATGAATGATGATGCCAATCACTACGAGCATTTTAGTTTTACTACATCAACAACACCAACTTCGTATCCTTTAAAGATTGTTACTTATCAAGCACAATCTCCACAAGATACTAACTTTGTTGTAATTAATTTTGTTTATACAATCAATGGAGTTGAAACCACTGCATTTACATTTACACCATTAAAAGGAACTAATATTGGTAATGGTATTTGGGATTTAGATAATGTTTACAATGGATCTTATTTGACATATGAATATCCTACAACAGAATCGGTTTCAATTGTTACTCATATGCCTAATGAGAGGTATACTTCTGATGAAGAAGAACAAGGATCAGCAATTAGAAGAGAAGCATTCTACGGATACTTTAGAGATGCCACTGAGGATTATACTAATTACTGGGAGTCGAGATACATCAATAATATTTTCAGACATCTAGGTGACAACTCCACATATATTACTGGGTACTATAGAAATAGCACCTATGATGATTACACTGTGAACTTCCAAAATAGCACTCTCGGAAATAGAAATGATGCTATTACAACATACAGAGTAAACTCTGGTGCAGATTACTATAGACCATTCAAAGGTCTTCCAATTAATCACAACATGATGCCTTGTCCATATTATCTACCTGATGATTTTGTTATGATTCAGTTTGCAGTTACTCCTGGTGCTACTGCATTTAGACCTGGAGATACAATTACTGTTAGTGGTAGTGAAGTTTATGAAATTATTAGAGTTTCTTACACTACAAATCAACTTGGTTTAGATAATATCAATAGTAATACTTCTAAAGGTATTGCATTCTGTGCGAGGACAACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c22382e456350c3a014fb67e6697b63bb4b2d88010eade0b20b4217cf98000a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8626
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50