Protein

View in Explore
Genbank accession
XPK42669.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MSRELMPKSGIMMPHVVVTRDAAVVGVSTVDGAAGAINLTEKYLQKSDAEATYQTKAEGATKQYVTDAINPIMTNALFKDDPFVNNDTPIRSGGGNGVESVDMIKVTPENTIKLGSYASSVQGVEIHSAGRLQVVDQNDSGVETKYPVYSKRYRPEVEDLPFASIGSYVKDSKGRTIGVTRTGINSDIKQFTQKVTFQQPVTVPDAVGDYDAVTLRQLRNSSGGSGGPTMSGISNFGIGDFHLRDSRAFIPAFEVLSDGQLLNRADYPDLWAYAQLLSPIEDSEWVDDIYQRGKYSKGDGSTTFRVPDRNGIQLNSLPALYGRGDGGASAANGLIFDAAAPNIYGDIGGVVAYGQTGAIARGQEETALAPQPSTGNGVLRVSLNASLVSPVYGRSTDEILTRNFVGVWTIRAHGGFTAANTSWSVINSDANRPAGGTRATSGSIIAEYKIGSEVEASTTLQTDAYIDGAYYGVINVYNKTKGVTKQLSFDDSGTLNSDRYAARFGTLMTWSETGSRRGTFSIDNQGIGTNFSFNSILSASQATSGGYKTTTHVGMIHNDTGSFADSCWHVAGDEDNKYGCRLTLRPSRNEIYYYTWQPGSTGTYTLAMNPVSDERLKHNIQDLSPDEAIRAIKGLDFKSFVYNNDNQGRTRRGIIAQQAEKVEPLYVKTRKFHDNDGVEQEQKELDATPMLLDTMQVVQDLLKRIEVLEAKLAEK
Physico‐chemical
properties
protein length:715 AA
molecular weight: 77487,17430 Da
isoelectric point:5,36869
aromaticity:0,08392
hydropathy:-0,41469

Domains

Domains [InterPro]
DC_1514
STR
20–329
DC_1514 DC_0203
DC_2049
STR
310–435
DC_2049 IPR030392
IPR030392
CHP
612–664
IPR030392
XPK42669.1
1 715
Architecture
STR
RBD
STR 20-435 | RBD 580-715
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPK42669.1
1 715
Domain Start End Length (AA) Confidence
N-terminal 1 97 97 0,8436
Central domain 98 296 200 0,2278
C-terminal 297 715 418 0,9519
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-97
Central
98-296
C-terminal
297-715

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage OliverMaurmann_Bas86
[NCBI] 		3398429 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPK42669.1 [NCBI]
Genbank nucleotide accession
PQ850622.1 [NCBI]
CDS location
range 11612 -> 13759
strand +
CDS
ATGTCTAGAGAATTAATGCCCAAATCTGGGATAATGATGCCTCACGTGGTAGTTACTAGAGATGCCGCAGTAGTGGGTGTATCTACTGTAGATGGGGCCGCTGGTGCTATCAACTTAACAGAAAAATACCTTCAGAAATCTGACGCTGAAGCAACCTATCAAACGAAAGCAGAAGGGGCTACTAAGCAATATGTAACCGATGCTATTAACCCCATTATGACGAATGCTCTTTTTAAAGATGACCCCTTTGTCAATAATGACACACCTATCCGCTCCGGTGGTGGTAATGGTGTTGAATCGGTAGATATGATTAAAGTCACCCCTGAGAACACCATCAAACTAGGGAGCTATGCTTCTTCTGTTCAGGGGGTTGAGATTCATTCTGCTGGTCGTCTTCAGGTTGTTGATCAGAACGATTCTGGAGTCGAAACTAAATATCCGGTATACTCCAAAAGATATCGCCCAGAAGTTGAGGATTTACCTTTCGCTTCAATCGGTTCCTACGTCAAAGATTCCAAAGGACGCACTATTGGTGTAACTCGTACTGGTATCAACTCTGATATCAAACAGTTTACGCAGAAGGTAACTTTCCAGCAACCTGTTACTGTTCCTGATGCTGTAGGTGATTATGATGCAGTTACACTGAGACAGCTTCGTAACAGTAGTGGAGGTTCTGGTGGTCCTACCATGAGCGGTATCTCCAACTTTGGTATTGGCGATTTCCATCTTCGTGATAGTCGTGCTTTTATCCCAGCTTTTGAAGTTTTGTCTGACGGGCAGCTTCTGAATCGTGCTGACTACCCAGATCTGTGGGCTTATGCACAATTATTGTCACCTATAGAGGATTCAGAGTGGGTAGATGACATTTACCAACGAGGTAAATACTCTAAAGGAGATGGCTCCACTACTTTCCGTGTTCCAGACCGAAATGGTATTCAGCTTAACTCCCTTCCGGCGCTTTATGGACGAGGTGATGGTGGAGCTTCGGCTGCTAATGGTCTAATATTTGATGCTGCTGCTCCTAATATTTATGGGGATATTGGTGGTGTTGTTGCTTATGGTCAGACTGGAGCTATCGCCAGAGGGCAGGAAGAAACGGCTCTCGCCCCTCAACCTAGCACTGGTAATGGTGTCTTGAGGGTTAGTTTAAATGCCTCACTAGTCAGTCCTGTTTATGGTCGTTCCACTGATGAAATCCTAACCCGTAACTTTGTAGGCGTTTGGACTATTCGTGCGCATGGTGGTTTTACTGCTGCTAATACTTCTTGGTCAGTTATTAATAGTGATGCAAACCGTCCTGCTGGTGGAACTCGAGCAACTAGTGGTTCTATTATTGCTGAATATAAAATTGGTTCAGAAGTAGAGGCTTCTACTACGCTCCAAACTGATGCTTATATCGACGGAGCTTACTATGGGGTTATCAATGTTTATAATAAAACCAAAGGAGTTACCAAGCAACTATCTTTTGACGATTCTGGAACCCTGAACTCTGATAGATATGCTGCTCGGTTTGGGACATTGATGACTTGGAGCGAAACAGGAAGTCGCAGAGGTACTTTTTCTATAGACAACCAAGGGATAGGGACTAACTTCTCCTTCAACTCCATACTAAGTGCCTCTCAAGCAACTAGTGGGGGGTACAAAACTACCACCCATGTTGGCATGATTCACAACGATACTGGATCTTTTGCTGATTCCTGCTGGCATGTTGCAGGGGATGAAGACAACAAATACGGTTGTCGTTTAACCCTTAGACCAAGCAGGAATGAGATTTATTACTACACTTGGCAGCCCGGCTCCACTGGAACTTACACTCTTGCTATGAATCCTGTGTCAGATGAAAGGTTGAAACACAACATTCAAGACCTCTCGCCTGATGAAGCAATTCGTGCGATTAAAGGTTTGGACTTCAAATCGTTTGTGTACAACAATGATAATCAAGGAAGAACTCGTCGTGGTATCATTGCACAGCAGGCAGAGAAAGTTGAACCTCTTTATGTTAAAACTCGTAAATTCCATGACAACGATGGGGTAGAGCAGGAACAGAAAGAGTTGGATGCAACTCCAATGCTTTTAGATACCATGCAGGTTGTTCAAGATCTGCTGAAGCGTATTGAAGTTCTAGAAGCGAAGTTAGCAGAGAAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
92b772d8f468b3ba5c5912f1d8f80cd6610ce9bfe8dcffffd1ece5fe9eadb66f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6085
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequences of Escherichia coli phages Huey, Dewey, and Louie Maffei,E., Willi,L. and Harms,A. — — GenBank