Protein

View in Explore
Genbank accession
WAX24362.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MQQSTGIRAPNVPVGAVISDFLGLQTDGNTKSLRRFTRESVLGNLDALTAAMQAGGGIVFATRALALAALGYNANQMAWVVLDPVANNNGVYQKIGATGVGTWVRVADLPYSFYRAIAAADESSANAIVATNDKPIASQNALVVVNAVADNTSNAVTVAFNGGPQLRVKTNSGNDPAVGGIKANMLLAGYIDNATATFRLLSDQASSAIQIAAETAAAGAVAAKTAAEAARDLAVQAADLAATVGAGDVPTAPSVALAKLSNFIVNRKYLIVSGYNDIGDAPPAIFVRVAAAPAHGASFRSADRFMPDGSTDAVHGGYWEYARSQDLMLEYLGRLEVDAATDTATLNAWAGALAAGYKPAPAPARSLKVNGQVAFTNLPAGTVLDFRKLKLSQQQRFAQMVYFNATNTSPTVIGGTYRGYAALELSLDPNTRPSEYCYDATLGPFDPAHPDATYNPESGAFIGVSAITAEGCGKLTVLGGDYQGFSGVGIYALNCSTTIRDVDGRGLGPRWVVAGNQGAHMFSFAAWSGTDNVDWDRVHEWTGFDCDDWGFCGLVAACKFICHSHRHLRALSQHIWYVIEADYVQIHSFHVAGAPLHGVKITYDNYAGKFGGVLYTNGLNATPGFRVRRFPQKDLWEATATFTTVDFDTELGAGKWKISPLMQRRGGVIHDITVDSCGYAVSGVVNSDDYANNEYVEGMIIHDIKVRNGTVGMHLERFGKNTLVHSCDIDTVTASGIELVDFAGIIRDLRIANAGKNGISGYLADDTVIERVRFQDCGLAGATTDEKIPILVTNRDAGTSRPSANATPALRVRDCAINYTAGDAPVSQLMLLDTSIQATVEGLRTTDTQATLNVTGSLVRGRFNERPFTSGAQNLPNIDLGPFTAITAFDPATAGTSEFRGAIATIIQTLQAFNIFNADPNP
Physico‐chemical
properties
protein length:922 AA
molecular weight: 97550,38200 Da
isoelectric point:5,50528
aromaticity:0,08568
hydropathy:-0,00597

Domains

Domains [InterPro]
DC_1788
STR
34–604
DC_1788 IPR011050
IPR011050
STR
668–781
IPR011050
WAX24362.1
1 922
Architecture
STR
STR
STR 34-604 | STR 665-790 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAX24362.1
1 922
Domain Start End Length (AA) Confidence
N-terminal 1 340 340 0,9709
Central domain 341 870 531 0,9928
C-terminal 871 922 51 0,9338
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-340
Central
341-870
C-terminal
871-922

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBeUSDA76-1
[NCBI] 		3003363 No lineage information
Host Bradyrhizobium elkanii USDA 76
[NCBI] 		398525 Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales > Nitrobacteraceae > Bradyrhizobium > Bradyrhizobium elkanii USDA 76

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24362.1 [NCBI]
Genbank nucleotide accession
OP596613 [NCBI]
CDS location
range 33728 -> 36496
strand +
CDS
ATGCAGCAATCGACAGGCATTCGCGCGCCGAACGTTCCGGTCGGCGCCGTCATCTCAGACTTTCTCGGTCTGCAGACGGACGGCAACACCAAATCGCTGCGCCGTTTCACGCGCGAGAGCGTGCTAGGCAACCTGGATGCGTTGACGGCGGCGATGCAGGCCGGCGGTGGCATCGTGTTCGCGACCAGGGCGCTGGCGCTGGCTGCGCTGGGCTACAACGCAAACCAGATGGCATGGGTGGTGCTCGATCCCGTTGCCAACAATAACGGCGTCTATCAAAAGATCGGCGCGACCGGCGTCGGGACGTGGGTCCGTGTCGCCGACCTGCCGTATTCGTTCTATCGCGCGATCGCGGCCGCCGACGAGAGCTCGGCAAACGCGATCGTCGCCACGAACGACAAGCCGATCGCGTCGCAGAATGCGCTCGTCGTCGTCAATGCCGTCGCGGACAATACCAGCAACGCGGTCACGGTCGCCTTCAACGGCGGCCCGCAGCTGCGCGTCAAGACCAACAGCGGCAACGATCCGGCGGTCGGCGGCATCAAGGCGAACATGCTGCTGGCCGGCTATATCGACAATGCGACCGCAACGTTTCGTCTGCTGTCCGACCAGGCGAGCTCGGCGATCCAGATCGCGGCCGAGACGGCTGCTGCTGGTGCCGTTGCCGCAAAGACCGCGGCCGAGGCCGCGCGGGACCTCGCCGTCCAGGCTGCCGACCTGGCCGCGACGGTCGGCGCCGGCGATGTCCCGACCGCTCCCTCGGTCGCCTTGGCGAAACTCTCGAATTTCATCGTCAACCGGAAATACCTGATCGTCTCCGGCTACAACGATATCGGCGATGCGCCGCCGGCGATCTTTGTGCGCGTCGCGGCGGCACCGGCGCACGGCGCGAGCTTCCGCAGCGCCGACAGGTTCATGCCGGACGGCAGCACGGATGCGGTGCATGGCGGCTATTGGGAATATGCCCGCTCGCAGGACCTCATGCTCGAGTATCTCGGCCGCCTCGAGGTCGACGCGGCGACCGATACCGCGACCCTCAACGCATGGGCGGGCGCGCTCGCGGCCGGCTACAAGCCGGCGCCGGCGCCGGCCAGGTCTCTCAAGGTCAACGGCCAGGTGGCCTTTACCAACCTGCCGGCCGGCACAGTGCTGGATTTCCGCAAGCTCAAGCTGAGCCAGCAGCAGCGCTTTGCGCAGATGGTCTATTTCAACGCGACAAACACGTCGCCGACTGTGATCGGCGGCACCTATCGAGGCTATGCGGCGCTCGAGCTGTCGCTCGATCCGAATACGCGGCCGTCGGAATACTGCTATGACGCGACGCTCGGCCCGTTCGATCCGGCGCACCCGGACGCGACATACAATCCGGAGAGCGGCGCCTTTATCGGCGTTTCAGCTATCACGGCGGAGGGGTGCGGTAAGCTGACCGTGCTCGGCGGTGACTATCAGGGCTTTTCCGGCGTCGGGATCTATGCGCTCAACTGCAGCACGACCATCCGCGACGTCGATGGCCGCGGACTTGGTCCGCGCTGGGTTGTCGCCGGGAACCAGGGCGCGCATATGTTCTCGTTCGCCGCATGGTCCGGGACCGACAACGTCGACTGGGATCGCGTGCACGAATGGACCGGCTTTGACTGCGACGATTGGGGCTTCTGCGGCCTCGTCGCGGCCTGCAAGTTCATCTGCCATTCGCATCGCCATTTGCGGGCGCTGAGCCAGCATATCTGGTACGTGATCGAGGCCGATTATGTTCAGATCCACTCTTTCCACGTCGCCGGGGCGCCGCTGCATGGCGTCAAGATCACCTATGACAATTACGCCGGCAAGTTCGGCGGCGTGCTCTACACCAACGGCCTCAATGCGACGCCGGGCTTTCGGGTGCGCCGGTTCCCGCAAAAGGATCTCTGGGAGGCGACCGCGACCTTTACGACGGTCGATTTCGACACCGAGCTCGGCGCCGGCAAATGGAAGATATCGCCTCTGATGCAGCGGCGCGGCGGCGTGATTCACGACATCACTGTCGACAGCTGCGGCTATGCGGTCAGTGGCGTCGTCAACAGCGATGACTATGCCAACAATGAATACGTCGAGGGCATGATCATCCACGACATCAAGGTCCGCAACGGCACCGTCGGCATGCATCTAGAGCGGTTCGGGAAGAATACCCTGGTGCATTCCTGCGATATCGACACGGTGACGGCGTCGGGGATCGAGCTGGTCGATTTTGCCGGCATCATCCGCGACCTCAGGATCGCCAATGCCGGCAAAAACGGCATCTCCGGCTATCTCGCTGATGACACCGTGATCGAACGCGTCCGGTTTCAGGATTGCGGCCTGGCCGGCGCGACGACCGACGAAAAAATTCCGATCCTCGTTACCAATCGGGACGCAGGCACCTCGCGGCCGAGCGCCAACGCGACGCCGGCGCTGCGGGTGAGGGATTGCGCCATCAACTACACGGCGGGAGATGCGCCGGTAAGTCAGCTGATGTTGCTCGATACCTCGATCCAGGCGACGGTCGAGGGCCTGCGTACGACGGACACGCAGGCCACCCTGAACGTCACGGGCTCGCTCGTCCGCGGCCGGTTCAATGAGCGGCCGTTCACCAGCGGTGCGCAGAATCTGCCGAACATCGATCTCGGGCCGTTCACGGCGATCACGGCGTTCGATCCGGCGACGGCTGGGACCTCGGAGTTTCGGGGGGCGATCGCGACGATCATTCAGACACTGCAGGCGTTCAACATCTTCAACGCCGATCCGAACCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
92886a538a6dd26d37327a7428698ae4384057b63bad4f8b257cbe3d6289b3ba
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6357
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank