Protein

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Genbank accession
YP_009832906.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,71
Protein sequence
MCNCEPWNCVEQAVNDVWSTKRGQITGLVDRAETAADNSEISAKASADSAVEAREFRDEAELAATTAVAAQTVVVGVATSLQNTADSLEQSAEELSNAIAGITVVTWYYTAVSENQTVIPVPDDKNQIAIQAIYSEGARKEPGPSRDFTYDPVTKQITLVEGIPLGQEIAIILGVYPENSDDITHILASSAGAGLIGTTNGNTVQDELNNNLLNDREQWRRSLAEAGLTLVDGSFEEGATVASATDAIWHAAGGQCYTWGGAFPKTVDPASTPASSGGVSGTAWVSVTDLTLRSALAGAGGAAMLGAVSGKNVQEEIDDLHAKDELLTGEVSMHSASLDDLAYSAISSISEKISEIKVKDTERLYDAFGNTVYYKGRNLFSFRRAKLHFGDTTHISSLCIGEIYEDGSYAIIWQKDYPITIDAKDPFLSIDNVSGGLIVSYQLMNVAENTYRNAVIGVVDLSSSGSFITNSTITTTSDYFLWGNVLRTPAGKYITTRYAIDHQSVDIITSSDANLNAGTTWSVARTFLLSEFAGKTAINETCLGYYKGMLVAVTRTGSSTSSMSTMHISRTNDLTGASGWINFGTNAGYAGPHIPAYTDEEDPLIIVGSVYRDGVRSDVSMAYTFDLASLSTPVTIAKMPRFNAYASAKKVSSGIWSMVFYTEYDENPDATHIYHKYFYFESFLRPDNQTNRGSNWDYSFNSGHSAIGNLGVVNSITSSHEIYFSMQRSMDNIKGVQFVVGPMAASKTITPVLYRLDGSLFASCASVTIPASPENQIVTALFNAGNVTLNAFSRMRLNLLSSSDTLPIGSRSLPSGHQPGIPLNIPFNLFNSGGLASAPYFLLSLVTL
Physico‐chemical
properties
protein length:848 AA
molecular weight: 91016,34980 Da
isoelectric point:4,72721
aromaticity:0,08962
hydropathy:-0,07724

Domains

Domains [InterPro]
Coil
Unmapped
78–98
Coil G3DSA:2.10.10.80
DC_0519
STR
87–290
DC_0519 DC_1844
IPR040775
RBD
232–289
IPR040775
YP_009832906.1
1 848
Architecture
STR
ATT
STR
STR 87-227 | ATT 228-298 | STR 299-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009832906.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 342 342 0,9922
Central domain 343 541 200 0,7205
C-terminal 542 848 306 0,5897
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-342
Central
343-541
C-terminal
542-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage phiA41
[NCBI] 		1965354 Uroviricota > Caudoviricetes > Schitoviridae > Cbunavirus A41 >
Host Pectobacterium wasabiae
[NCBI] 		55208 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009832906.1 [NCBI]
Genbank nucleotide accession
NC_048659 [NCBI]
CDS location
range 21418 -> 23964
strand +
CDS
ATGTGTAATTGTGAACCGTGGAATTGTGTTGAACAGGCTGTTAATGACGTTTGGTCTACCAAACGAGGTCAGATCACAGGTCTGGTTGATCGCGCTGAGACTGCTGCTGATAATAGCGAGATAAGCGCGAAGGCGTCAGCCGATAGCGCTGTCGAAGCTAGGGAATTTCGTGATGAAGCAGAACTCGCAGCAACTACAGCAGTAGCTGCACAGACTGTTGTAGTTGGTGTAGCTACTTCTCTACAGAATACTGCGGATAGTCTCGAACAAAGTGCAGAAGAACTCAGTAATGCTATTGCTGGTATTACTGTGGTTACTTGGTACTACACGGCTGTATCTGAAAATCAGACTGTAATTCCTGTGCCTGATGATAAAAACCAGATTGCTATTCAAGCAATCTATAGTGAAGGTGCCCGTAAGGAACCGGGGCCAAGTCGTGATTTTACTTACGATCCAGTTACAAAACAAATTACCCTAGTTGAAGGTATCCCGCTAGGGCAGGAAATAGCCATTATTCTCGGTGTTTACCCTGAGAACTCGGACGATATTACTCATATCCTGGCTTCCTCTGCGGGTGCAGGTTTGATTGGTACTACCAATGGTAATACTGTTCAAGATGAGTTGAATAATAATCTTCTTAATGACCGTGAGCAATGGCGTCGTAGTCTTGCTGAGGCAGGCTTAACACTTGTTGATGGTAGCTTTGAGGAAGGGGCCACCGTTGCTTCTGCCACCGACGCGATTTGGCACGCCGCAGGCGGCCAGTGCTATACGTGGGGTGGGGCATTCCCGAAGACGGTTGATCCGGCGTCTACGCCTGCATCGAGCGGTGGGGTTTCGGGCACTGCATGGGTAAGCGTTACTGACCTGACGCTGCGTAGTGCGCTGGCGGGTGCTGGTGGTGCCGCTATGCTGGGTGCTGTATCTGGGAAAAATGTTCAGGAAGAGATTGATGATCTTCACGCTAAAGATGAATTGCTTACTGGTGAAGTTTCCATGCACAGTGCATCACTTGATGATCTGGCTTATTCGGCAATATCTTCTATTTCGGAGAAAATAAGCGAGATAAAAGTAAAGGATACAGAAAGATTATATGACGCATTTGGGAATACCGTTTATTACAAAGGGAGGAATTTATTCTCGTTTCGCCGCGCCAAGCTTCATTTTGGCGATACTACGCACATTAGTAGCCTATGTATCGGTGAGATATACGAAGATGGGAGCTATGCGATAATTTGGCAAAAAGACTACCCAATTACAATTGATGCAAAAGACCCATTTCTTAGTATTGATAATGTGAGCGGGGGGCTGATTGTCAGCTATCAGTTAATGAATGTAGCTGAAAATACCTACCGTAATGCCGTTATTGGTGTCGTTGACTTAAGTAGCAGCGGTTCATTTATTACGAATTCAACAATAACAACGACCAGTGATTACTTTCTATGGGGTAATGTGTTAAGAACCCCTGCTGGTAAGTACATAACCACACGGTATGCTATTGACCATCAAAGCGTAGATATCATCACATCGTCAGATGCGAATTTAAACGCCGGAACCACATGGTCAGTCGCGAGAACTTTTCTTCTTTCGGAGTTCGCAGGGAAAACCGCAATAAACGAAACATGTTTAGGATATTACAAAGGAATGCTAGTTGCAGTGACGCGAACTGGAAGCTCAACATCCAGCATGTCTACGATGCACATATCAAGAACAAATGATTTAACCGGAGCGTCGGGATGGATAAACTTTGGGACAAATGCTGGATATGCAGGGCCTCATATACCAGCGTACACCGACGAAGAAGACCCGCTTATCATAGTCGGGAGTGTATATAGGGACGGGGTTAGATCTGACGTAAGCATGGCCTACACTTTCGATTTAGCCTCATTATCCACGCCGGTTACTATAGCTAAAATGCCAAGATTTAATGCATATGCATCAGCTAAGAAAGTCAGTAGCGGTATATGGTCGATGGTATTTTATACTGAATATGACGAAAACCCAGATGCCACTCATATTTATCATAAGTACTTCTACTTTGAATCATTTTTGCGGCCTGATAATCAGACAAATAGGGGTAGTAATTGGGACTATTCATTTAATTCGGGTCATTCGGCGATTGGTAATCTTGGTGTTGTTAATTCAATAACTTCTTCGCATGAGATATATTTCTCAATGCAGAGAAGCATGGATAACATAAAAGGAGTTCAATTTGTAGTTGGCCCTATGGCTGCAAGCAAGACGATAACCCCTGTACTTTATCGATTAGATGGATCTCTATTCGCTTCTTGTGCATCCGTCACGATACCGGCAAGCCCAGAAAATCAAATTGTGACGGCGCTATTCAATGCGGGTAACGTAACACTAAATGCGTTCTCTAGAATGAGGCTAAATCTATTATCTAGTAGTGATACATTACCTATCGGCTCCAGATCGCTTCCTTCCGGGCATCAACCTGGGATACCTCTCAACATTCCGTTTAACCTCTTCAACTCTGGCGGTCTAGCGTCTGCACCTTACTTTTTATTATCTTTGGTGACGCTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4503a75d40b5cb1aa3ae28710e7e2c5ce3e758d0b5b348053eca2787cf831f47
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7270
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and genomic, phenotypic and morphological characterization of the first Podoviridae lytic bacteriophages (phi)A38 and (phi)A41 infecting Pectobacterium wasabiae Czajkowski,R., Smolarska,A., Rabalski,L. and Narajczyk,M. 2017-07-12 — GenBank