Protein

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Genbank accession
AGN12250.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,91
Protein sequence
MSKRYLSGRVKRLPQDQLKDDRYKYLGLEQAEPNLADPITSPAVPSGQQYQLVAIPGFEGKRYWVPVGGGLIPGAISVYDEGTLVSAASSVTQLNFVGAAVTAQVDVQNPSGHPGIAATITVVPVTIGSNPPVSPIHGELWWEDDIGDLCIYYDDGDTSQWVTVVASGNGGGPTGPAGPPGPTGITGPSGPPGPSGPGGGPGPAGPQGDAGPSGGPGPTGPAGPPGPAGGPPGPQGPQGDAGPTGPTGPPGTGSPGPAGPPGPSGGPGPTGPAGPTGPDGPTGPTGPAGGPPGPPGPSGPPGPSGGDGPAGPSGSPGPPGPSGGPPGPSGGPGPAGPPGPDGPSGPPGPAGSAGAIPAGVVVMWSGAQNAIPSGWVLCDGNNSSPDLRDKFVIGAGSNYAVDNTGGSADAVVVDHSHSASTSVSGAGAHTHSFSASDSHTHSFSGSGSDTFSGSGSHTHSFSGSGSHGHSLSLSDSAHQHTSAIPAQNQVAGNSGSQTIWGSVTNSPTWGATANVSGSADSASVSISGTTGSGTASISGSVSISISGTTGSGTASISGTTGSGGSGVSGSTTISSTGVTGTNKNLPPYYALCYIMKS
Physico‐chemical
properties
protein length:597 AA
molecular weight: 56341,17220 Da
isoelectric point:4,80837
aromaticity:0,04523
hydropathy:-0,34472

Domains

Domains [InterPro]
DC_0835
STR
16–199
DC_0835 DC_0620 DC_0085
IPR050149
Unmapped
172–447
IPR050149 SSF88874
SSF88874
STR
355–485
SSF88874
cd22641
STR
356–440
cd22641
AGN12250.1
1 597
Architecture
STR
STR
STR
STR 16-199 | STR 226-294 | STR 330-597
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12250.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 66236 -> 68029
strand -
CDS
ATGTCTAAGAGATACTTAAGTGGGCGGGTCAAACGATTACCCCAAGATCAATTAAAAGATGATAGGTATAAGTATCTTGGTCTAGAACAGGCAGAACCAAACCTTGCTGATCCAATTACTAGTCCTGCAGTTCCTTCTGGTCAACAGTATCAGTTGGTTGCTATTCCTGGTTTTGAAGGTAAGAGATATTGGGTTCCTGTTGGTGGTGGATTAATTCCAGGTGCGATTAGTGTATATGATGAAGGAACTCTTGTTAGTGCTGCGAGTAGTGTAACTCAACTTAATTTTGTTGGTGCAGCAGTAACAGCACAAGTAGATGTTCAAAATCCTTCGGGACATCCAGGCATCGCTGCAACAATTACAGTTGTACCTGTTACTATTGGTTCTAATCCTCCAGTTAGTCCTATTCATGGAGAATTATGGTGGGAAGATGATATTGGAGACTTATGTATTTACTATGATGATGGTGATACTAGTCAGTGGGTTACTGTAGTTGCTAGTGGAAACGGTGGTGGTCCTACTGGTCCTGCTGGTCCTCCAGGTCCAACTGGAATAACTGGTCCTTCTGGTCCTCCTGGTCCTTCTGGTCCAGGTGGCGGTCCTGGTCCTGCTGGCCCTCAAGGTGATGCTGGTCCGAGTGGTGGTCCTGGTCCTACTGGACCTGCTGGTCCTCCTGGTCCTGCTGGTGGTCCTCCAGGTCCTCAAGGTCCGCAAGGTGATGCTGGTCCAACAGGTCCAACTGGTCCTCCTGGTACTGGATCTCCTGGTCCTGCAGGTCCTCCTGGTCCAAGTGGAGGTCCTGGTCCAACTGGTCCTGCTGGTCCTACGGGTCCAGACGGTCCTACAGGTCCAACTGGTCCTGCTGGTGGTCCTCCAGGTCCTCCTGGTCCAAGTGGTCCTCCAGGTCCGAGTGGTGGAGATGGTCCTGCTGGTCCAAGTGGTTCACCTGGTCCTCCAGGTCCTAGTGGTGGTCCTCCAGGTCCTAGTGGTGGTCCTGGTCCTGCTGGTCCTCCAGGTCCAGATGGTCCAAGTGGTCCTCCTGGTCCTGCTGGATCTGCTGGTGCGATACCTGCTGGTGTTGTTGTTATGTGGTCTGGTGCTCAGAATGCTATTCCTAGTGGATGGGTACTTTGCGATGGTAACAATAGCAGTCCAGATTTAAGAGATAAATTTGTTATTGGTGCTGGTAGTAACTACGCTGTAGATAATACAGGTGGTAGTGCTGATGCTGTAGTTGTAGATCACTCTCACTCTGCAAGTACTTCTGTTAGTGGTGCTGGTGCTCATACACACTCCTTCTCTGCTTCTGATTCTCACACTCACTCATTCTCAGGTTCGGGTTCAGATACATTCTCTGGTTCTGGTTCTCATACACACTCCTTCTCTGGTTCTGGTTCTCACGGACACTCTTTGAGTTTAAGTGACTCTGCTCACCAACACACATCTGCTATTCCAGCACAGAATCAAGTCGCTGGTAATTCAGGTTCTCAAACAATTTGGGGTAGTGTTACTAACTCTCCAACTTGGGGTGCAACTGCTAATGTTAGTGGTTCTGCTGATAGTGCAAGTGTTAGTATTTCAGGTACTACAGGATCGGGTACTGCAAGTATATCTGGTTCAGTATCAATCTCAATCTCAGGTACAACTGGTAGTGGAACTGCAAGTATATCTGGTACAACTGGATCTGGTGGATCAGGTGTAAGTGGTAGCACTACAATTAGTTCGACAGGTGTTACAGGAACGAATAAGAATCTTCCTCCTTATTATGCACTATGTTACATTATGAAGTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a68410849998ae1e60d3717f9894c7b3257b792431bcfc14a3f1c22ff585cbc2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4994
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank