Protein

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Genbank accession
XTB82752.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKDIDIIDIDYSAKKPEYKKEDKVDIAKISAPWIVPEEGPIYGDNSLRVIRGGRDLIRGKDWEPSTPVTNLSELTGKPVYLYVELKDHILASGGEVELVYQRVGMPQISVKTLLTMLEEMVIQGKPVDWDTQITGKPKTYYPAWHSHDIKNPNELIGFGGLVELFSMFTFGSSANGAKISELLKKLQDKIYNELNYTQKLLWGSIMVHSRNYKNPHELKPGDVDLGNVANFATATPQQDADGLRADLYSTPAGLNRVIDENAPDSSDYLIQSELPFGYYGSGIYLPPPITGSFEGLGGDWENSAFCREGNGWLVGLIRAFDGRVKNLYYVYKTDLFERNHYVNAWLHTYVQYKHPTITAAGKDANYVINGSNYDVLAVGSVKNPENGWDIADDDMWICLANSTFDPNSHTLKKTNIKSIGIENGPGGRDVARAGPGQMTISRVGNWVYLICSYNTTLGDTNLIKQDYTDGSNYQQRFFRFPYKDLLDNTKDTVTFVPVNVTYDNLLRQRRSGQSMYMMTPIHNAEGNGVVQYLIKFSPAVSRVHSHRRRQFFMIGNPDNPRQARLRVMAVSYTTMQRDGVNTSNWRNIYVDYDWDVETNTLTLSPHWYWATSNLATGDFTAPPEWFTWNDAAGAAPQFMSSFTFVAGSHVPGFGYVAMVSSQTGTPPYGMSSIIYNRDGNPLNDYKYMFEPPNWFNQLGQHNTYWVPMILRSPFGVSGFPRYYADVYEVDGANRSTPIEIFYGEKENQEQGCFYRITEGGVDDNYDYRDALQSKYIPKPIYGRKTNSSFGQVAGITYNTPLVNRPRVKDRRSRETGLFNWVRRDIQYNPGVAHDFSQTMNDNGGQEQIRPGSDGSIVINLAMQYNMDPLTKVLVARPRTDYKLRIPRSIWNDLITNALGAHYSTCVDICASFYICQDPGTNNGQPYCMFQIQYHKQPDYEESRCIIGIFNWDVERVDADGIRVMRMGAIEYPFYSKYSYNEHLAPPSISPSNRTYTRQLRYGVHGQWDIYTWNGLTVKYAHMEILDYPGEGPRNFEQVWFNGIQLGTVGNANTSRVYFSRRNNVITEGSYAESGGQAFNEYGWQVQANPQWGMCSGIPAVVSGGAIDLLTPWNGGGTGHGWQSDKLIMLGATYVEGNWSLFVNADVNVTFNGFSTLAKMTNWDLRDLTDVYRNQTFYVYCVANGSTAKYEVSKVLRPHSAASILVATVKTNTFGITTIDPRQSFTISGFPLTRARDMGVPVSSGAITEAGAYQFLKRSDLYNN
Physico‐chemical
properties
protein length:1263 AA
molecular weight: 142572,19030 Da
isoelectric point:6,02069
aromaticity:0,12589
hydropathy:-0,45883

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XTB82752.1
1 1263
Domain Start End Length (AA) Confidence
N-terminal 1 265 265 0,9925
Central domain 266 469 205 0,8958
C-terminal 470 1263 793 0,3398
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-265
Central
266-469
C-terminal
470-1263

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage SXP01
[NCBI] 		3420196 Viruses > unclassified bacterial viruses >
Host Shewanella xiamenensis
[NCBI] 		332186 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XTB82752.1 [NCBI]
Genbank nucleotide accession
PV593634 [NCBI]
CDS location
range 133715 -> 137506
strand +
CDS
ATGAAAGACATTGATATCATTGATATCGACTATTCTGCTAAAAAGCCAGAATACAAAAAGGAAGACAAGGTCGATATTGCAAAGATCTCAGCTCCATGGATTGTACCAGAAGAAGGTCCTATATACGGCGATAACTCATTACGTGTTATTCGTGGTGGTCGTGATCTTATTCGTGGTAAGGACTGGGAACCATCTACCCCTGTAACTAACCTTTCAGAACTGACAGGTAAACCAGTTTATCTTTATGTAGAGTTGAAGGATCACATCTTAGCTTCTGGTGGTGAGGTTGAGCTGGTTTACCAACGTGTTGGTATGCCTCAAATCTCCGTCAAGACTTTACTTACCATGTTGGAAGAAATGGTAATCCAAGGTAAACCTGTTGATTGGGATACACAGATCACCGGTAAACCTAAAACGTATTACCCGGCATGGCACAGCCACGATATCAAGAACCCTAACGAGTTGATTGGTTTCGGTGGACTGGTAGAACTGTTTTCTATGTTTACGTTCGGTAGTTCCGCTAACGGCGCTAAGATCAGTGAACTGCTGAAGAAGTTGCAGGATAAAATCTATAATGAATTGAACTACACTCAGAAACTACTCTGGGGTTCAATCATGGTTCACTCCCGTAACTATAAGAACCCGCATGAATTAAAACCTGGTGACGTTGATCTGGGTAATGTGGCTAACTTTGCTACAGCAACCCCTCAGCAAGATGCCGACGGTTTACGCGCAGACTTATATTCCACCCCAGCTGGTTTGAACCGTGTTATTGATGAGAACGCTCCTGACTCGTCTGACTATCTGATTCAGTCAGAGCTACCATTCGGTTACTATGGTTCCGGTATTTACCTCCCTCCTCCAATTACAGGTTCATTTGAAGGCTTGGGTGGTGACTGGGAAAACTCAGCATTCTGTCGTGAAGGTAACGGTTGGTTAGTTGGTTTGATTCGTGCTTTCGATGGTCGTGTTAAGAACTTGTATTACGTCTATAAGACAGACCTATTCGAACGTAACCACTATGTTAACGCATGGTTGCACACATACGTTCAGTACAAGCACCCGACTATCACAGCAGCTGGTAAAGATGCCAACTATGTAATCAACGGTTCCAACTACGACGTACTCGCAGTGGGTAGTGTCAAGAACCCTGAGAATGGTTGGGATATCGCAGATGACGATATGTGGATTTGTTTGGCTAACTCAACGTTTGACCCTAACTCCCACACATTGAAGAAAACCAACATCAAGTCCATCGGTATTGAAAACGGTCCTGGTGGTCGAGATGTGGCTCGTGCTGGTCCTGGTCAAATGACAATTAGTCGTGTGGGTAACTGGGTTTACTTGATCTGCTCTTATAACACCACTCTTGGTGATACCAACTTGATCAAGCAGGACTACACGGATGGTTCTAACTACCAGCAACGTTTCTTCCGTTTCCCTTATAAAGACTTGTTGGACAATACCAAGGACACCGTTACATTTGTTCCTGTAAACGTGACCTATGACAACCTGTTGCGTCAACGTCGTTCTGGACAGTCAATGTACATGATGACACCTATCCATAACGCAGAGGGTAATGGGGTTGTTCAGTACCTGATTAAGTTCTCACCTGCCGTTAGTCGTGTTCACTCTCACCGTCGTAGACAGTTCTTTATGATAGGGAACCCAGATAACCCAAGGCAAGCTCGGTTAAGGGTGATGGCGGTTTCATACACCACAATGCAGCGAGATGGTGTCAACACATCAAACTGGCGTAACATTTACGTCGATTATGATTGGGATGTAGAAACGAATACCTTAACGCTATCGCCCCACTGGTATTGGGCCACATCTAACCTAGCAACTGGTGATTTTACCGCACCACCAGAATGGTTTACTTGGAATGACGCTGCCGGGGCAGCTCCACAATTCATGTCCAGCTTTACGTTTGTAGCGGGTAGTCACGTCCCTGGTTTTGGTTACGTGGCCATGGTATCCAGTCAAACAGGTACTCCTCCTTACGGGATGTCGTCTATTATTTATAACCGCGATGGTAATCCACTTAACGATTATAAATACATGTTCGAACCACCTAACTGGTTTAACCAATTGGGTCAGCATAACACCTACTGGGTTCCAATGATCCTTCGTTCTCCTTTCGGTGTATCCGGGTTCCCTCGTTACTACGCCGATGTTTATGAAGTCGATGGCGCTAACCGATCCACACCAATAGAGATTTTCTATGGTGAAAAGGAAAACCAGGAACAGGGTTGTTTCTACCGTATCACAGAAGGTGGGGTAGATGATAACTACGATTATCGCGATGCGTTACAATCCAAGTACATACCTAAACCGATCTATGGTCGCAAGACGAACTCAAGCTTTGGTCAGGTAGCTGGGATAACGTATAACACTCCGTTGGTTAATAGACCTAGGGTGAAAGACCGTCGCAGTCGTGAAACTGGATTGTTCAACTGGGTTCGTAGAGATATACAGTACAACCCAGGTGTTGCTCATGATTTCTCACAGACCATGAACGACAATGGTGGGCAAGAACAAATCAGACCAGGTTCTGATGGTTCTATCGTTATAAACCTCGCCATGCAATACAACATGGATCCTTTAACCAAAGTACTTGTTGCAAGACCTCGTACCGATTATAAATTACGCATACCAAGATCTATTTGGAATGACTTGATCACCAATGCGCTTGGTGCCCACTATTCCACCTGCGTTGATATCTGTGCGAGTTTCTATATTTGTCAGGACCCCGGTACCAATAACGGTCAGCCTTACTGCATGTTCCAAATACAGTATCATAAACAACCCGACTATGAAGAGTCTCGCTGCATCATTGGGATATTTAACTGGGACGTGGAGCGTGTTGATGCTGATGGTATCCGCGTAATGAGAATGGGTGCTATCGAATATCCTTTCTATAGCAAATATAGTTATAACGAACATCTTGCTCCTCCATCCATTTCCCCAAGTAACCGTACTTATACTCGTCAGTTGAGATACGGAGTACATGGACAGTGGGATATTTATACCTGGAACGGCTTGACGGTCAAGTACGCCCATATGGAGATTCTTGATTACCCTGGTGAAGGTCCTCGTAACTTTGAGCAAGTGTGGTTTAACGGTATCCAATTAGGAACAGTCGGTAACGCCAACACAAGCCGAGTTTACTTCTCTAGACGTAATAACGTCATTACCGAGGGTTCTTATGCTGAAAGTGGTGGTCAGGCATTTAACGAATACGGTTGGCAGGTTCAAGCTAACCCACAATGGGGAATGTGTTCAGGTATTCCAGCTGTTGTCTCTGGTGGTGCTATTGACTTGTTAACACCATGGAACGGAGGCGGTACTGGTCACGGTTGGCAGAGCGATAAGCTTATCATGCTTGGTGCAACCTACGTTGAGGGTAACTGGTCGTTGTTTGTTAACGCCGATGTTAACGTTACGTTTAACGGGTTCTCTACTTTAGCTAAGATGACTAACTGGGACTTGAGAGATTTGACCGATGTATATCGTAATCAGACTTTCTATGTATACTGCGTTGCTAACGGTTCTACCGCTAAGTACGAAGTGTCCAAAGTTCTAAGACCTCACTCGGCTGCAAGTATCCTGGTTGCTACTGTTAAGACCAACACCTTTGGTATTACAACTATCGATCCAAGACAGAGTTTCACAATTAGTGGATTCCCTCTGACTCGTGCAAGGGATATGGGTGTTCCAGTATCTTCTGGAGCTATTACAGAAGCTGGTGCATATCAGTTCCTTAAGCGTAGTGATTTGTACAACAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0224a756e9098bbac0fe6559d7d069a858e3d20aeebbc2d2a78486940251e746
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2656
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50