Protein

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Genbank accession
WYD62233.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATVPTNNPIQSEDPRDLKFNAGKIDEVVTSDAHYYTDRFGVRRWTIAGFQYTAEEAIRNYGYITIDSFEDGATLTLPNQVLRYEANSEYYRWDGAFPKAVAAGSTPTSTGGIGLGAWVSVGDASLRSNLAEPDGYQLIGGLAENYSLPVKFVVVDNAPYNGDLKAALTAATPGSVFWLGKKTYNITGLYGVNKNTVENITIVGAGMPQLSSDKRYLIDGTGTIIQGTIKNQARGFKIFNCGIDVGDYVSQNVYPTVTYEDGLQHCGVGANANIEIHNVKILNTVTDPSKPGTHSLLLEQLSGVKLGYVECIGGFHGFTVKCQGLQGGIAHCYGQYGDAFIFKSDSGGACADNYMERIAVGLYDNSGWPDVTMGGIYDAHDNVTIDRIGIGELIVQNASWGLIPSDANTGFITNVSIGRYSAFGVYGNYYSLTIDNKCVGWTIGEHRISNASGGIRVHPDSVEINIGTGSSKGNTKSGYALGGNSLSHGILFANENGEAGVEYLGGLGFDASLVRGYVNGTVLVSGMPSVKDGTPVNGWADTGAFDMTLTGKTVRITGSLTRGTAAVAYNTISACRPLKRVPVPAWGVNASSTMVPVECYIETNGQLNISGFASIPTGGTIYFSGEYLTK
Physico‐chemical
properties
protein length:630 AA
molecular weight: 66896,01170 Da
isoelectric point:5,22665
aromaticity:0,10000
hydropathy:-0,10032

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
62–132
G3DSA:2.10.10.80
G3DSA:2.10.10.80
ATT
62–130
G3DSA:2.10.10.80 DC_0478
IPR040775
RBD
66–123
IPR040775
WYD62233.1
1 630
Architecture
ATT
STR
ATT 62-132 | STR 133-630
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYD62233.1
1 630
Domain Start End Length (AA) Confidence
N-terminal 1 161 161 0,9930
Central domain 162 516 356 0,9932
C-terminal 517 630 113 0,9876
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-161
Central
162-516
C-terminal
517-630

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage gmqsjt-1
[NCBI] 		3135718 No lineage information
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYD62233.1 [NCBI]
Genbank nucleotide accession
PP530290.1 [NCBI]
CDS location
range 1 -> 46120
strand +
CDS
ATGGCTACCGTACCAACAAATAATCCAATCCAAAGCGAAGACCCGCGCGACCTGAAATTTAATGCCGGTAAGATCGACGAGGTAGTGACATCTGATGCACATTACTATACCGATCGATTCGGTGTACGCCGCTGGACAATTGCTGGATTTCAGTACACCGCAGAAGAGGCTATCCGCAATTATGGCTACATCACAATTGATAGCTTCGAAGATGGTGCGACGCTGACGCTTCCCAATCAGGTTTTGCGTTATGAAGCGAACAGTGAATATTACCGCTGGGATGGGGCGTTTCCGAAAGCTGTTGCTGCGGGCTCAACACCCACATCGACTGGTGGAATTGGCCTTGGTGCGTGGGTTAGTGTTGGTGATGCTTCTTTGCGCTCAAACTTGGCTGAACCGGATGGGTATCAATTAATAGGTGGGCTTGCTGAGAATTACAGCCTTCCTGTTAAGTTCGTTGTTGTTGATAACGCACCTTATAATGGTGATTTAAAAGCAGCACTAACAGCAGCAACACCTGGTAGTGTTTTCTGGTTGGGTAAGAAAACGTATAACATTACTGGGCTATATGGTGTCAATAAAAATACCGTTGAGAATATTACTATCGTTGGGGCCGGAATGCCGCAACTATCATCTGATAAACGATATCTTATAGATGGGACTGGCACCATTATTCAAGGCACAATTAAAAATCAGGCAAGAGGCTTCAAGATATTTAATTGTGGTATAGACGTTGGTGATTATGTTTCTCAAAACGTTTATCCGACAGTTACTTATGAAGATGGCCTGCAGCATTGCGGTGTTGGTGCAAATGCAAACATTGAAATACATAACGTGAAAATTCTTAACACCGTGACAGACCCATCAAAACCGGGTACTCACAGCTTACTGCTTGAACAGTTGTCAGGTGTTAAATTAGGGTACGTGGAATGTATCGGCGGTTTTCATGGTTTTACAGTTAAATGCCAGGGTTTGCAGGGTGGAATTGCACACTGCTACGGTCAGTATGGTGATGCATTTATTTTCAAATCTGATTCTGGCGGGGCGTGTGCCGATAACTACATGGAAAGAATCGCAGTTGGTCTTTATGACAACTCCGGATGGCCTGATGTCACTATGGGCGGGATTTATGATGCTCATGATAACGTAACAATCGACAGAATTGGTATTGGTGAGTTAATTGTACAGAATGCATCATGGGGATTGATACCGTCTGATGCTAATACCGGTTTCATAACAAACGTAAGCATTGGTAGATACTCTGCATTCGGTGTTTACGGGAACTATTACTCATTAACCATTGATAATAAGTGCGTTGGTTGGACTATCGGAGAGCACAGAATTAGCAATGCTTCTGGTGGAATTCGTGTTCATCCTGACTCTGTAGAAATAAATATAGGTACCGGATCCTCTAAAGGAAACACAAAAAGTGGTTATGCACTGGGTGGTAATAGCCTCAGTCATGGAATTCTGTTTGCTAACGAAAACGGTGAAGCGGGTGTGGAATATCTCGGTGGGTTAGGTTTTGATGCATCGCTTGTCCGTGGTTACGTGAACGGAACCGTTCTTGTATCAGGAATGCCGAGTGTGAAAGATGGTACACCCGTTAATGGATGGGCTGATACTGGTGCATTTGATATGACTTTAACTGGTAAAACAGTGCGTATAACAGGTTCGTTAACCAGAGGTACAGCCGCTGTTGCATATAATACTATCTCCGCATGTAGACCTTTAAAAAGAGTACCAGTACCAGCATGGGGTGTTAATGCATCAAGTACAATGGTTCCAGTAGAATGTTATATTGAAACCAACGGGCAGCTAAACATTTCAGGTTTTGCATCGATCCCAACAGGCGGGACAATTTATTTTAGCGGTGAATATTTAACTAAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
29bed9e92da56d293a74764ee8154bbe1a25e3c8498c9becfc9e4c44365c8ca6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8152
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A new strain of lysable Salmonella bacteriophage Guo,M., Zhang,L. and Su,Z. 2013-12 — GenBank