Protein

View in Explore
Genbank accession
APZ82864.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MIQDNPDIRLLGGFIPQSANSHVFQVTPEQFIGGDTSRINQAINFASTNSVYNVVCNGTYYLDSAILMKSNVNLINNGKIIMNSGMKDNMIRAASTVVGTPISNFKIKGVGLFQGSSDTWGSDNPSGVNGEAWRSIAILLANASDFEIEGITIKNSHGWGINMEQSRYGSVKNIHFDNDGSKSNQDGVNVRHGSHHIVIENISGVTHDDIVAVTNLLFGNAINYLGQTIYESGKANFNSHDITIRNINRHISAGTIGGFTPPVKKGGITIMCHDGLKVYNVSIDGVTGDAQIYIQFNQITYWVTSPGTVNDVYNLNISNINDAPVYFGIPIKNSSLINIPKKDITGTYNSGVFPAGSLNVTRKYNDGDFEFFATV
Physico‐chemical
properties
protein length:375 AA
molecular weight: 40668,02930 Da
isoelectric point:6,03672
aromaticity:0,09067
hydropathy:-0,15813

Domains

Domains [InterPro]
IPR012334
STR
19–365
IPR012334
IPR012334
STR
30–365
IPR012334
PTHR31736
Unmapped
33–255
PTHR31736
IPR011050
STR
34–355
IPR011050
IPR000743
ENZ
69–215
IPR000743
APZ82864.1
1 375
Architecture
STR
STR 19-365 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APZ82864.1
1 375
Domain Start End Length (AA) Confidence
N-terminal 1 34 34 0,9612
Central domain 35 364 331 0,9916
C-terminal 365 375 10 0,2492
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-34
Central
35-364
C-terminal
365-375

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage FL-1
[NCBI] 		908820 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium sp. B183
[NCBI] 		907046 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Flavobacterium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APZ82864.1 [NCBI]
Genbank nucleotide accession
KY421186.2 [NCBI]
CDS location
range 14373 -> 15500
strand +
CDS
ATGATACAAGACAATCCAGATATTAGATTATTAGGAGGATTTATTCCTCAATCAGCAAATAGCCATGTTTTTCAAGTAACGCCTGAGCAATTTATAGGCGGAGATACTTCTAGGATAAACCAAGCAATAAATTTTGCATCTACGAATTCTGTTTACAATGTAGTTTGTAATGGCACATATTATTTAGATTCTGCTATTCTAATGAAAAGCAATGTAAACCTGATTAATAATGGTAAAATAATTATGAACTCAGGTATGAAAGACAATATGATTAGGGCGGCATCTACTGTTGTTGGAACACCTATCAGCAATTTCAAAATTAAAGGTGTAGGTCTATTTCAAGGGTCTTCTGATACTTGGGGATCGGATAACCCATCTGGTGTAAATGGAGAAGCGTGGAGGTCTATAGCTATATTATTAGCGAATGCTTCAGATTTTGAAATAGAAGGAATTACGATAAAAAATTCTCATGGATGGGGAATTAATATGGAGCAGTCAAGATACGGAAGCGTTAAGAATATTCATTTTGATAATGACGGATCTAAATCTAATCAAGATGGAGTAAATGTTAGACACGGTTCTCATCATATTGTTATAGAAAACATTAGCGGTGTTACTCATGATGATATAGTTGCAGTTACAAATTTATTATTTGGAAATGCAATAAACTATCTAGGGCAAACTATTTATGAATCCGGGAAAGCTAATTTTAATTCACATGATATTACAATAAGAAACATTAATAGACATATAAGTGCGGGGACAATAGGTGGTTTTACACCTCCTGTAAAAAAAGGAGGAATTACGATTATGTGTCATGATGGACTAAAAGTATACAACGTTTCTATTGATGGTGTGACGGGAGACGCTCAGATATACATTCAATTTAATCAGATAACTTATTGGGTGACATCACCTGGAACTGTTAATGATGTGTACAATTTGAATATTTCAAATATTAATGACGCACCTGTGTATTTTGGAATACCTATTAAAAACTCTTCATTAATAAACATACCCAAAAAAGACATTACCGGGACTTATAATAGCGGTGTTTTTCCAGCCGGAAGTTTAAACGTTACTAGAAAGTATAATGACGGTGACTTTGAATTTTTTGCAACTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
61259569dbfbad65cb50c450b734bb3d4cb8e081e2332cfdf3bd2b465266fc9a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8026
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of an aquaculture associated phage FL-1 infecting Flavobacterium species Laanto,E., Ravantti,J. and Sundberg,L.-R. 2017-06-08 — GenBank