Protein

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Genbank accession
YAW78892.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MMKRFNAGEGLELRVDVGLGGALKPETLRVINQLENTIVDFGYKPDDNVVSFDNIVPLRVDTRNITNNTKFIVGNPTDFTPYYLKIEDTGASLPTMRTRRGVFSEILDDTNSQSNLLKVVSNTTAVYSESLFQLTGRSSLPTDKYINVTADGNDIFSVYANGRIVAGKSTEESDPDLTLITKDYVDARATDPSVVHDISGFNLPIGENQWFDVEVLSTILVDDGVYDFGLEASAVDNSVIAADINAPGSGYSVGDKVTLVGINGTGQADCVIMIDEVNESDGSVTAVSIYRGGEGYTESTNVATTYSGAGNSLSIDITAVSDNTDNYGYMMYSGTIPYLGVVGQFHGSGMDSEIFLQRCGDPGAHDIYLRVYQEDTPTSQPILQIKKTGADPVFFDKFKFTFKRQF
Physico‐chemical
properties
protein length:406 AA
molecular weight: 44115,47710 Da
isoelectric point:4,34286
aromaticity:0,09360
hydropathy:-0,19655

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAW78892.1
1 406
Domain Start End Length (AA) Confidence
N-terminal 1 193 193 0,3557
Central domain 194 392 200 0,3366
C-terminal 393 406 13 0,9488
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-193
Central
194-392
C-terminal
393-406

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage SA-M
[NCBI] 		3417976 Viruses > unclassified bacterial viruses >
Host Shewanella algae
[NCBI] 		38313 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAW78892.1 [NCBI]
Genbank nucleotide accession
PQ510825 [NCBI]
CDS location
range 197642 -> 198862
strand +
CDS
ATGATGAAAAGATTTAATGCTGGTGAAGGTCTAGAACTACGTGTTGACGTTGGGTTAGGTGGAGCCTTAAAGCCAGAAACATTAAGGGTAATAAACCAATTAGAAAATACAATTGTTGACTTCGGGTATAAACCAGATGATAACGTTGTTAGTTTTGACAACATTGTACCTTTAAGGGTAGATACCAGAAATATAACAAACAATACCAAGTTCATTGTTGGTAATCCAACTGATTTCACGCCTTATTATCTTAAAATTGAAGATACAGGAGCGTCACTTCCAACCATGAGAACTAGACGAGGTGTATTTTCTGAGATATTGGACGATACAAATAGTCAGAGTAACTTACTTAAAGTAGTTTCCAATACTACTGCTGTATATTCCGAGTCACTTTTTCAGTTAACTGGTAGATCATCTCTTCCTACAGACAAATATATCAATGTAACTGCTGATGGTAATGATATATTTTCTGTTTATGCGAATGGTAGAATTGTGGCTGGTAAATCCACTGAGGAATCAGATCCAGATCTTACTTTAATCACAAAGGATTATGTGGACGCTAGGGCTACTGATCCATCAGTTGTTCATGATATATCTGGATTCAACCTTCCAATAGGTGAAAACCAATGGTTTGATGTTGAAGTATTGAGTACTATTCTAGTGGATGATGGGGTTTATGATTTTGGTCTTGAGGCAAGCGCAGTAGATAATTCAGTAATTGCTGCCGATATCAACGCCCCAGGTAGTGGATATTCAGTTGGCGATAAGGTAACACTAGTTGGTATCAATGGTACGGGACAAGCTGATTGTGTTATTATGATTGACGAAGTTAATGAATCTGACGGCTCAGTTACTGCTGTTTCAATCTATAGAGGCGGGGAAGGATACACCGAATCTACTAATGTCGCTACAACATATTCTGGTGCTGGTAATAGTTTATCAATTGACATCACTGCTGTATCTGATAATACAGATAATTATGGATACATGATGTACTCTGGCACTATCCCGTATCTTGGGGTTGTTGGTCAGTTCCATGGATCAGGAATGGATTCTGAAATATTCCTACAAAGATGTGGAGACCCAGGAGCACACGACATTTATTTGAGAGTATACCAAGAAGATACCCCTACGAGTCAACCAATATTACAAATAAAGAAAACAGGTGCTGATCCTGTATTCTTTGATAAATTCAAATTCACATTTAAAAGACAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f7a6fd942b86d257ccff758191823f0a81f3b07a6dfb124c45b2ecdc29dcd98
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,4311
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50