Protein

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Genbank accession
AIX12998.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,57
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQINGWSSETQGLQKRPPTTFVKRLAAPGAWGAKPLVHLVNRDASEQYYMIFTGSGVAVADLKGNLYSVRGYDGYANCPDPRGDLRLITVADYTFVVNRRTPVQMGSELTHAGYRKLNTRALVPCRGGQYGRTLVVEVLIDVTWVTLATVVLPSGVGTNQDEVAKMVEKVDAQNIIRDMVAQVNTNGAPWKITAAAGPGYMLLHRDDGGSFQGIRTKDGYADQLINGFIYQVQSFNKLPAQAPEGFLVEITGEATRSGDNYWVRYDGPGRVWKETVKPGIVAGLNRATMPRGLVRAADGQFDWKVLDWNNRACGDDETNPLPSFVDGTINDVFFFRNRLGFLSGENVIMSRSSRYFNFFPPSVASLSDDDPLDIAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVELNLTTEFNVQDTARPFGIGRGVYFSAPRAAYTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAPGIVYLYKFLYMAEEIAQQSWSHWEFGSQVNILGAASIGSYMFLLMDRPEGIVLERMEFTAFTKDFSVEPYRTYMDGKVTTVCNSFDEDLFQSFINVTALYGGAPGARESFWTIDTLGVGQLHEPPKGGWAADPLIRLQGDQRGKTYIVGRQYTFLYEFSKFLIKQTADDGTTATEDIGRLQLRRAWLNYERSGSFEVSVNNNDGRNTDNDFVYAMAGGRLGSEVILGELNLGTGQYKFPVTGNAQKQRVTIVSDTPNPLNVIGCGYEGNYIRRSSGI
Physico‐chemical
properties
protein length:807 AA
molecular weight: 89290,46310 Da
isoelectric point:5,81118
aromaticity:0,11029
hydropathy:-0,26357

Domains

Domains [InterPro]
IPR058003
TTP
1–807
IPR058003
AIX12998.1
1 807
Architecture
TTP
TTP 1-807
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AIX12998.1
1 807
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9935
Central domain 144 342 200 0,0703
C-terminal 343 807 464 0,1247
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-342
C-terminal
343-807

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Pf-10
[NCBI] 		1562076 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Pifdecavirus
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIX12998.1 [NCBI]
Genbank nucleotide accession
KP025626 [NCBI]
CDS location
range 24285 -> 26708
strand +
CDS
ATGGGTCTGGTTAGTCAGTCCGTCAAGAACCTGAAGGGAGGCATTAGCCAACAGCCGGACATCCTCCGGTTTCCCAATCAGGGTGCGCAACAAATCAACGGCTGGTCGAGCGAGACCCAAGGTCTTCAGAAGCGACCGCCAACCACGTTCGTGAAGCGACTGGCTGCGCCGGGTGCATGGGGCGCTAAGCCTCTGGTCCACTTGGTCAACCGTGATGCGTCCGAACAGTATTACATGATCTTCACAGGGAGCGGCGTGGCCGTAGCGGACCTTAAGGGCAACCTTTACAGCGTCCGTGGGTATGATGGTTATGCCAACTGCCCTGACCCTCGTGGAGACCTGCGCCTCATCACTGTGGCCGACTACACGTTCGTTGTGAACCGACGCACTCCGGTGCAGATGGGAAGCGAGCTGACCCACGCTGGCTACCGAAAGCTCAACACTCGGGCGCTTGTTCCGTGCCGTGGTGGTCAGTATGGCCGGACGCTGGTCGTTGAGGTCCTTATCGACGTGACGTGGGTAACGCTGGCGACTGTCGTGCTTCCTTCTGGTGTCGGTACGAACCAAGATGAAGTAGCGAAGATGGTTGAGAAGGTGGACGCGCAGAACATCATTCGCGACATGGTTGCCCAAGTGAATACCAACGGCGCACCATGGAAGATCACCGCTGCGGCAGGTCCGGGCTACATGCTCCTACACCGTGACGATGGTGGTTCGTTCCAAGGCATCCGCACCAAGGACGGCTATGCTGACCAGTTGATCAACGGCTTCATCTATCAGGTCCAGTCTTTCAATAAGTTGCCCGCTCAGGCCCCTGAAGGTTTCCTTGTGGAGATCACCGGGGAAGCCACACGCTCAGGCGACAACTACTGGGTCCGTTATGATGGTCCGGGGCGTGTCTGGAAGGAGACCGTTAAGCCGGGGATCGTCGCTGGGCTGAACCGTGCAACCATGCCTCGTGGTCTGGTCCGTGCGGCTGACGGCCAGTTTGACTGGAAGGTCCTCGACTGGAACAACCGCGCCTGTGGCGACGACGAGACCAACCCGCTGCCATCCTTCGTGGACGGTACGATCAACGACGTGTTCTTCTTCCGTAACCGTTTGGGGTTCCTCTCAGGCGAGAACGTAATCATGTCGCGGTCGTCGCGGTACTTCAACTTCTTCCCACCAAGCGTGGCGAGCCTGTCCGATGATGACCCGCTGGACATCGCGGTATCCCACAACCGTATCTCGATCCTCAAGTACGCCGTGCCGTTCTCTGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGTTGTCCTCTCAGGGCATCCTGTCTCCCAAGACGGTCGAGCTGAACCTGACCACTGAGTTCAACGTACAGGACACCGCTCGGCCTTTCGGTATCGGGCGTGGTGTGTACTTCTCGGCCCCTCGTGCGGCCTATACGAGCCTCAAGCGTTACTACGCAGTGCAGGACGTATCGGACGTGAAGAACGCCGAGGACGTATCAGCGCACGTTCCAAGCTACATCGAGAACCGGGTGTTCAACATCCACGGCTCGGGTACAGAGAACTATGTGACACTGCTGTCTGATGGCGCTCCGGGGATCGTGTACCTCTACAAGTTCCTCTACATGGCCGAAGAGATCGCGCAGCAATCGTGGAGTCACTGGGAGTTCGGCTCTCAGGTCAACATCCTCGGTGCGGCGTCTATCGGGTCCTACATGTTCCTCCTTATGGATCGCCCTGAAGGGATCGTACTGGAGCGCATGGAGTTCACGGCCTTCACCAAGGACTTCTCTGTGGAGCCTTATCGGACCTACATGGACGGCAAGGTGACCACGGTGTGCAACTCCTTTGATGAAGACCTGTTCCAATCGTTCATCAACGTGACCGCTCTGTACGGTGGCGCTCCGGGCGCTCGTGAGTCCTTCTGGACAATCGACACGCTGGGTGTGGGCCAACTCCATGAGCCTCCGAAAGGTGGCTGGGCGGCTGACCCATTGATTCGCCTTCAGGGTGACCAACGGGGCAAGACGTACATCGTCGGTCGGCAGTACACGTTCCTCTATGAGTTCTCGAAGTTCCTCATCAAGCAAACCGCTGACGATGGGACCACAGCGACTGAGGACATTGGCCGCTTGCAGCTCCGTCGCGCTTGGTTGAACTATGAGCGTTCCGGGTCGTTCGAGGTCAGTGTGAACAACAACGATGGCCGCAACACGGACAACGACTTCGTTTACGCGATGGCCGGTGGCCGACTGGGGTCTGAGGTTATTCTGGGCGAGCTGAACCTTGGGACTGGGCAGTACAAGTTCCCGGTAACGGGCAACGCACAGAAGCAACGGGTGACCATTGTGAGCGACACGCCGAACCCACTTAACGTGATTGGCTGTGGCTACGAGGGTAACTACATCCGTCGAAGCTCGGGCATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
204adadb42a394c2874d783dd809451c382a367dae41dc679dcf4084f93e0dc1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9024
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence and comparative genome analysis of Pseudomonas phage Pf-10 Valentovich,L.N. and Pilipchuk,T.A. 2020-10 — GenBank