Protein

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Genbank accession
WDQ27597.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MARVHPFQTNFTAGELTPKLAGQVDFKKYNNGVEIMENLTVFPQGGCQRRNGSRFVAEVKDSSTTVRLIPFEFSITQSYCLELGNNYIRFFKDNGQITEGAKTISAITKANPAVVTANSHGFSNGDDVWISGIVGMTRLNGRRFTVANKTTNTFELSGENSTSYDTYTSGGTASRAYQITTTYTSSQIYDLQFTQSADVMYIVHPDHTPRKLTRTGHTSWSLTDVDFEKGPYLDTNTSSTTMTPNGTSGSVTITASTSTFVASDVGRLISIGDGHAKITAYSSGTSVTATTTENFANTNANATWALGAWCVANGYPRTVSFFEQRLVFGGSTSYPQTVWASQSGLYENFDAGDASAADAFIYTIAANRVNVIRWLAPARDLIVGTVGGEFKVGRPTGEPLKPDNVNISQQTTYGGYTTAPTQIGNAVLFVQRQQRKVREFSYRFEDDAYLAPDMTLLAEHITDTGIVDVDYAQEPDSIYWACRTDGTLLGLTYQREEDVIAWHRHIFGGSNKYTFNGASAVTTYTSDANFNGYVTISSHGLSTGDAVVYNAGGGTKIPQLVEGQTYYVYRRDANTIELADTYSQAIDRTITQISAGSGANHTFTTKAKIKSITSINESSENQVWLLVERRINGTTKKYVEYLDPTLNMDCTLSAIVNAGTTIVTGLNHLEGEEVQILVGDAVYPNQTVSAGSITVTLPAQTGYKSIEIGLGYISKLKTMKIEAGSQSGTAQARKKRYNEVVVRLHKSVGITINGDQLPFRTSATPMGQDIPEFSGDKRVSNLGWDREGQIQVEQTQPLPMTILGITGTLVTSD
Physico‐chemical
properties
protein length:813 AA
molecular weight: 88470,29040 Da
isoelectric point:5,72689
aromaticity:0,09471
hydropathy:-0,30836

Domains

Domains [InterPro]
DC_0058
STR
1–590
DC_0058 DC_1984
IPR042302
STR
101–175
IPR042302
IPR032418
RBD
114–174
IPR032418
WDQ27597.1
1 813
Architecture
STR
RBD
STR 1-590 | RBD 647-813
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDQ27597.1
1 813
Domain Start End Length (AA) Confidence
N-terminal 1 98 98 0,9913
Central domain 99 297 200 0,2781
C-terminal 298 813 515 0,2275
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-98
Central
99-297
C-terminal
298-813

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage EXVC032P Baldr
[NCBI] 		3029571 No lineage information
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDQ27597.1 [NCBI]
Genbank nucleotide accession
OQ414636 [NCBI]
CDS location
range 10546 -> 12987
strand +
CDS
ATGGCAAGAGTACATCCTTTTCAAACAAATTTTACTGCTGGTGAATTAACACCTAAACTTGCAGGTCAAGTAGATTTTAAAAAATATAACAATGGTGTAGAAATAATGGAAAATCTTACTGTATTTCCACAAGGCGGTTGTCAAAGAAGAAATGGTAGTAGATTTGTAGCAGAAGTAAAAGATTCATCTACAACAGTTAGATTAATACCATTTGAATTTAGTATTACACAATCTTATTGTTTAGAATTAGGTAATAATTATATAAGATTTTTTAAAGACAACGGACAAATTACAGAAGGTGCAAAAACAATATCAGCAATAACAAAAGCAAATCCTGCTGTAGTAACAGCTAATTCACATGGATTTAGTAATGGTGATGATGTTTGGATTTCTGGCATTGTAGGAATGACTAGATTAAATGGAAGAAGATTTACAGTAGCAAATAAAACAACAAATACATTTGAATTATCTGGTGAAAATTCTACAAGTTATGACACATATACATCTGGCGGTACAGCATCAAGAGCATATCAAATAACTACTACATATACATCATCACAAATATATGATTTACAATTTACACAGTCAGCAGATGTTATGTACATTGTACACCCAGATCATACTCCTAGAAAATTAACTAGAACAGGACATACATCTTGGTCATTAACAGATGTAGATTTTGAAAAAGGGCCATATTTAGATACAAATACATCTAGCACAACAATGACACCAAACGGAACTTCTGGTTCTGTTACAATTACAGCATCTACATCTACATTTGTAGCATCTGATGTTGGAAGATTAATTAGCATAGGTGATGGCCACGCAAAAATAACAGCATATTCTTCTGGTACATCTGTAACTGCAACAACAACAGAAAATTTTGCAAATACAAATGCAAATGCTACATGGGCATTAGGTGCATGGTGTGTTGCTAATGGTTATCCTAGAACAGTATCATTTTTTGAACAAAGATTAGTATTTGGTGGTTCTACATCATATCCACAAACAGTATGGGCATCACAATCTGGTTTATATGAAAATTTTGATGCAGGGGATGCTAGTGCGGCAGATGCATTTATTTATACTATTGCGGCTAATAGAGTTAATGTAATTAGATGGTTAGCACCTGCAAGAGATTTAATTGTAGGTACAGTTGGTGGTGAATTTAAAGTAGGAAGACCAACAGGTGAACCATTAAAACCAGATAATGTAAATATATCACAACAAACTACATATGGTGGTTATACAACAGCACCAACACAAATTGGTAATGCTGTATTATTTGTACAAAGACAACAAAGAAAAGTTAGAGAATTTTCTTATAGATTTGAAGATGATGCATATTTAGCACCAGACATGACATTGTTAGCAGAACATATTACAGACACAGGAATAGTAGATGTTGATTATGCACAAGAACCAGATTCTATTTATTGGGCTTGTAGAACTGACGGAACATTATTAGGATTAACATATCAAAGAGAAGAAGATGTAATTGCATGGCATAGACATATATTTGGTGGATCAAATAAATATACATTTAATGGTGCAAGTGCAGTAACAACATATACATCTGATGCTAATTTTAATGGTTATGTAACTATATCATCACATGGGTTATCTACAGGTGATGCAGTTGTTTACAATGCAGGTGGTGGTACAAAAATACCACAATTAGTAGAAGGTCAAACATATTATGTTTATCGTAGAGATGCTAACACAATAGAATTAGCAGATACATATTCACAAGCAATAGATAGAACTATTACACAAATATCTGCTGGGTCTGGTGCAAATCATACATTTACAACAAAAGCAAAAATTAAAAGTATTACATCTATAAATGAATCATCTGAAAACCAAGTTTGGTTATTAGTTGAAAGAAGAATAAATGGAACAACTAAAAAATATGTAGAATATTTAGACCCAACATTAAATATGGATTGTACATTGTCCGCAATAGTAAACGCAGGTACAACAATAGTAACAGGCCTAAATCATCTTGAAGGGGAAGAAGTACAAATATTAGTAGGTGATGCAGTATATCCTAATCAAACTGTAAGTGCTGGATCAATAACAGTTACATTACCTGCACAAACAGGGTATAAAAGTATAGAAATAGGATTAGGTTATATATCTAAATTAAAAACTATGAAAATAGAAGCAGGTTCACAATCTGGTACTGCACAAGCACGAAAAAAAAGGTATAATGAAGTAGTTGTAAGATTACATAAAAGTGTAGGAATAACTATAAATGGAGATCAATTACCATTTAGAACATCTGCTACACCAATGGGTCAAGACATACCAGAATTTTCTGGTGATAAACGAGTAAGTAATCTAGGATGGGATAGAGAAGGACAAATACAAGTTGAACAAACACAACCTTTACCTATGACTATTTTAGGAATAACAGGAACATTAGTAACAAGTGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
11e9efa6e111bb258a183877d9e612cd1fa2eb2ba3d55de33d299042064c88a6
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2779
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Draft Genome Sequences of Pelagipodophages Hodr EXVC031P and Baldr EXVC032P, Isolated from the Sargasso Sea Lewis,P.J., Buchholz,H.H., Michelsen,M.L. and Temperton,B. 2014-05 — GenBank