Protein

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Genbank accession
YP_010053157.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATTPTNKPIPSEDPRDLKFNAGKIDEVVTSDAHYYTDRFGVRRFTIEGFQHTAEEAIRNYGYITMYSFEDGATLTLPNQVLRYEATGEYYRFDGDLPKTVPAGSTPETSGGIGLGKWISVGDASLRSELNGQNGIRIISGSEIIVDKFSDALLLSGVKSKVVRTLSHHDGNHGGASYKRTGNTGTPSTGSVELFYDAEGNEWSLSVDYIDYYMFGAELNGTTDDTLSIVAAHTYANTNKIPIVQNGGNAFVTPNDSSRQIAFNTDATFTGGFKFISNSITGRGFVVRSIADEVTLSQSDVVISEFVATRMKIPSLSGYENCYAAIQSTETDLNRKRDTGPALQLKRQPVVIGKDGTLDAPLWATFNSISAIKIQSILLPTITIDGFRLRSEGTLTNANPFGVQRNNVVIKNFYYEKGTTSATIPVQSLLSVEFCYNVTIDGISCDPLSVGIVDYNYVINTWTSSKISIRNMTSFDGWAQLDGNYCRNVSISDSVIDRVGSHFRCYDYTFKNLTARRGRCIAVSGGGLLHVENIKVYAESSTVSDEQYTVVTIRGDYGAEWDGAVVVKNVIFDFSNFYSSSTGITASIVSAFIDSTVGAHDFMRTVVMPKSISIKDCTFIINTMPGSYLRALGVGCTSAIVSSVIYPSNIDVENITCDNSSGTNKFKVRGVEWNTLQRSEIRRHDVNIRVKGVVNIDPATYGETILDDTTSTNTILTTGTNTRIYMTVRDCPWQSLRTEGNYIRTKVYGGSITYFTGTAGTSNRISFYGTEFNGTRFRGAIKVTIQDCIFNNYVDYTSASVPIGNGQSVDTNTTFIIGTATEFGATITGTAVTASTAKTGYSQSGYYQ
Physico‐chemical
properties
protein length:848 AA
molecular weight: 92541,15910 Da
isoelectric point:5,56905
aromaticity:0,10259
hydropathy:-0,19068

Domains

Domains [InterPro]
DC_1559
ATT
1–188
DC_1559 DC_2212 IPR011050 DC_0867
G3DSA:2.10.10.80
ATT
62–132
G3DSA:2.10.10.80
IPR040775
RBD
67–123
IPR040775
YP_010053157.1
1 848
Architecture
ATT
ATT
STR
RBD
ATT 1-188 | ATT 206-241 | STR 370-596 | RBD 624-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010053157.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,9891
Central domain 226 827 603 0,9879
C-terminal 828 848 20 0,6977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-827
C-terminal
828-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoS Sa179lw
[NCBI] 		2126819 Uroviricota > Caudoviricetes > Buchananvirus >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010053157.1 [NCBI]
Genbank nucleotide accession
NC_054637.1 [NCBI]
CDS location
range 19751 -> 22297
strand +
CDS
ATGGCTACCACACCAACTAATAAACCAATTCCGTCAGAAGACCCGCGCGACCTCAAGTTTAACGCCGGGAAGATTGATGAGGTAGTGACATCTGATGCGCATTACTATACAGATCGCTTTGGCGTGCGCAGATTTACTATCGAAGGATTTCAGCACACCGCAGAAGAGGCTATACGCAACTATGGCTATATTACGATGTACAGCTTTGAAGATGGTGCGACACTGACGCTTCCTAATCAGGTGCTGCGCTATGAGGCTACTGGCGAATATTATCGTTTTGATGGCGACCTACCAAAAACAGTGCCAGCGGGTTCAACTCCTGAAACTTCTGGTGGAATTGGTTTAGGTAAGTGGATTAGCGTTGGTGATGCTTCACTGAGGTCCGAATTAAATGGTCAGAACGGTATAAGGATAATTTCTGGTTCTGAAATTATTGTCGATAAATTTAGCGACGCTCTGCTTCTTTCTGGAGTGAAATCAAAGGTTGTTAGAACGCTATCGCACCATGATGGTAATCATGGTGGTGCGTCATATAAAAGAACAGGAAACACAGGAACACCATCAACAGGTTCTGTAGAGTTATTTTATGACGCAGAAGGTAATGAGTGGTCGCTTTCAGTTGATTACATTGATTACTATATGTTTGGTGCTGAACTTAATGGTACTACCGATGATACACTATCGATAGTTGCAGCGCATACTTACGCAAACACCAATAAAATTCCTATTGTGCAGAATGGTGGTAACGCTTTCGTCACCCCAAACGACTCCTCCAGGCAGATTGCATTTAACACTGATGCCACATTTACCGGTGGGTTTAAGTTCATCTCAAACTCAATCACTGGCCGGGGTTTTGTCGTACGTTCTATCGCCGATGAGGTAACTCTCTCACAGAGTGACGTTGTTATTTCTGAATTCGTAGCAACACGGATGAAGATTCCAAGTCTGTCCGGTTACGAAAACTGTTACGCAGCTATTCAGTCTACGGAAACCGACCTAAATCGTAAACGTGACACCGGCCCGGCATTGCAACTTAAACGTCAACCGGTAGTAATTGGCAAGGATGGAACTCTTGATGCACCACTGTGGGCGACTTTCAACTCAATATCTGCGATTAAAATTCAAAGTATCCTTCTACCAACCATAACCATTGATGGTTTCCGGTTACGGTCTGAGGGTACGTTAACCAATGCCAACCCCTTCGGCGTTCAAAGGAACAACGTTGTCATAAAAAATTTCTACTATGAGAAAGGCACGACATCGGCAACAATACCGGTTCAATCCCTACTCAGTGTAGAATTCTGCTATAACGTAACCATAGATGGCATCTCATGCGACCCGTTGAGTGTCGGTATCGTTGATTACAACTACGTTATAAACACATGGACAAGTTCTAAAATTTCCATCAGAAATATGACATCTTTTGATGGCTGGGCGCAGCTTGACGGCAACTATTGCCGAAATGTTTCTATTAGTGATTCTGTAATCGACCGTGTCGGCTCTCACTTTAGGTGCTACGACTACACTTTCAAAAACCTCACAGCACGAAGGGGGCGCTGCATCGCTGTTTCCGGAGGAGGATTACTCCATGTGGAAAACATCAAGGTTTATGCGGAATCATCCACGGTATCCGATGAACAGTACACTGTTGTAACCATTCGAGGTGACTACGGTGCTGAGTGGGACGGCGCTGTCGTAGTTAAGAATGTTATTTTCGACTTCAGTAACTTCTACTCATCGTCTACTGGCATAACGGCATCTATAGTGTCGGCGTTTATCGATTCCACCGTGGGTGCACACGATTTTATGCGTACAGTCGTTATGCCCAAGAGCATATCTATTAAAGATTGCACTTTCATCATAAACACCATGCCTGGAAGTTATCTTCGTGCATTAGGGGTTGGTTGTACTTCTGCAATAGTCTCTAGTGTTATTTACCCAAGTAATATAGATGTAGAAAACATAACGTGTGATAACAGTTCTGGTACAAATAAATTTAAGGTCCGCGGGGTGGAATGGAACACTTTACAGCGTTCTGAGATACGTCGACATGACGTGAACATCCGCGTTAAAGGTGTTGTAAATATAGACCCGGCGACCTACGGAGAGACCATACTTGATGACACTACCAGCACAAATACCATCCTTACTACCGGAACAAACACCAGAATCTATATGACTGTTCGTGATTGCCCGTGGCAGAGCTTACGCACGGAAGGTAACTATATCCGCACAAAAGTTTATGGTGGGAGCATTACTTACTTCACAGGCACGGCAGGTACATCAAACCGTATATCTTTTTATGGAACTGAGTTCAACGGAACAAGGTTTCGCGGTGCGATAAAGGTTACTATCCAGGACTGTATTTTCAACAATTATGTTGATTACACATCCGCATCTGTTCCCATAGGGAACGGACAGAGTGTTGATACCAACACGACTTTTATCATTGGGACTGCTACAGAGTTCGGAGCTACCATAACTGGCACTGCTGTTACGGCCTCAACAGCAAAAACGGGATACTCGCAATCTGGTTACTATCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d9be79617591aeb0c790402fb15039f21e6a7311702f36d3dc5f38e23a396892
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7400
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Escherichia coli Phage vB_EcoS Sa179lw Isolated from Surface Water in a Produce-Growing Area in Northern California Liao,Y.-T., Liu,F., Sun,X., Li,R.W. and Wu,V.C.H. 2018 — GenBank