Protein
View in Explore- Genbank accession
- AWN09166.1 [GenBank]
- Protein name
- YomR
- RBP type
-
TSP
- Protein sequence
-
MPREDAAQFNGTLSTLTYPNKYSAVIPVEAPFYRIGLTLTVTDPATNTKRKLIEGLDYYLGHYFKDQAEAEQDAIYGSIMLLNATNIEYELLAVGRQYRIPASEIGKALVKTDLKDPRNSDWADLMKYPPIIAPIDPPKDLDEAILRDEVVKALNDIRLGIIARASELDEAFTDVTNLIFENGKKVFDDEMYQHHLNMNAHHYTCADIRALPVLGKAVDATKAFGRTLAELVDLMSTSGIQQKHVDMLLDNTLGDLLGRMRVLNNDAITFQTTTGHVISVKGEKFIITSPQPMFLKADQDNNDPGIATEFSAGLNTLYVHSGTAANVKAPVYNGVYLVTPDMVGLYLTSVKILPANAYFKSSDTLKIYGSGKQTNRVYMNAELPGATTTVEGLFAITNLSTSVAASTAISQKAVTDLKELLDNYVDDTYTINGKAFIKDSNGEMHLTLTAADFGVDKMNNTTPLAKPVTNALKTVLAGKVASDHTHTIADLDNVPYASTSTTGLAKLWDAIDTTADKMVTSRQGFLLDERINEMNEKISTLLPAWTVGGAQYGNQSFLPIPTVSNFAGFGFNRANPWGAARYEAGNVYMLRNGSDGPEDTRRVYYWYGNVDANNKFTNTYPTAFPYHPAGMSKFPGVTLLRVLTASEDVGLFEGSDGAKYLVLFNGTMNYAKHSEVYKVTFPDLTRTTGGALTYDSVMSFITVALAKTHVVFMMTHVTSDSFKVGGWSVALNALKGTDPIAFSVIPLSYAKMNGDVAQIVDDGAPENDNTATTRLAYVTQGARDKWTRTRTPVNYRPSFFSAAKLNNVRVRSEMHSYFADDKSASWSDAWSVVYNVDIDTGVLTVENPLFPVAITENKIEFPNGTRYKSVTNRNIGVAIYANLFANADFMIDSWSDVYSNNPTNISITPLAGTEFYDLLGSDTTLNESSNVQVIGAVGSVYKQYMRGIIHLGGAERTMLLRYLATSTCISMRYDLTNKYFPDAVGYGPDNLRVAQDISTYNEFALTPNVWKGNKLYLNGRVINAAGSYPYKNVDGTTTFTADRITVSDALWASLETAIGAALPLWNDAETIDKQFNVHTFDIGGLNAAFLVATCRTWENADHIRAYCRTTVWKIPMTVNSGNVSFGTTGWVVAVPEWRDGEAAISLMRDQVVNSKLVARDDGYVIQLGAIYRSGVVGDSRWRTYVMTCDQSFDNWTNTMRAFNPGIAEADLYIQPETGYIGYTKWLYLGLYVAADIYQNTSRTFATGTPVETYLAGVKTAEGWNLYITEEELLSFGSSRYTIPTYGVDIRDLYPTNYKNRTLYMHAVLNNGNPEYQLLEQQMPDTSTRLYIGYMTSDSERITFSNFDRVKRLGAVKQLLEHESVAYRHDMDVGRDQKLGRLGPLYKEPIGAIATDSSHGYLDSQQLSSVVAGQKRTRKGVSQVFSGLSQALITTQSNTAYKYWKKPTNIVSVTADESAEGAAYGMQWIGVPQPAVVPATTDMGILVRGKYIIPGTVGDSTAFDVRVLLPFGSSGTIINTEEPGVDVDMDNDPNALETPADGSVVTLRRYSPAGIACTITILVAIPKDPLTDFGLRDVAWQIVDLGGNVVAQGDESSYIGIVPLGTATLGTPVVFNARTYTFTDVDGAIPFVTTGAEGIAPALVSTPLGNGDTEITVAHHFMNERGEQKLDEVQVNLMFRT
- Physico‐chemical
properties -
protein length: 1680 AA molecular weight: 184335,63090 Da isoelectric point: 5,13855 aromaticity: 0,09940 hydropathy: -0,16982
Domains
Domains [InterPro]
No domain annotations available.
Legend:
ATT
STR
RBD
CBM
LEC
ENZ
CHP
LNK
TAS
TTP
UNK
Unmapped
Tail Spike Domain Segmentation
Tail Spike Domain Segmentation
This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.
Domain Layout
1
1680
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 278 | 278 | 0,9784 |
| Central domain | 279 | 827 | 550 | 0,6352 |
| C-terminal | 828 | 1680 | 852 | 0,1437 |
Legend:
N-terminal
Central domain
C-terminal
3D Structure with Domain Coloring
The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).
Domain Coloring
N-terminal
1-278
1-278
Central
279-827
279-827
C-terminal
828-1680
828-1680
Taxonomy
| Name | Taxonomy ID | Lineage | |
|---|---|---|---|
| Phage |
Salmonella phage SPAsTU [NCBI] |
2136797 | Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes |
| Host |
Salmonella enterica [NCBI] |
28901 | cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales |
Coding sequence (CDS)
Coding sequence (CDS)
Genbank protein accession
AWN09166.1
[NCBI]
Genbank nucleotide accession
MH221129
[NCBI]
CDS location
range 228721 -> 233763
strand +
strand +
CDS
ATGCCGAGAGAAGATGCGGCGCAGTTTAATGGTACACTAAGTACCCTTACTTACCCGAACAAATATTCGGCGGTGATTCCTGTAGAGGCACCGTTCTATCGTATCGGTTTAACTTTAACCGTAACCGACCCAGCAACAAACACGAAACGTAAGTTGATTGAAGGTCTCGACTATTACCTGGGGCATTATTTTAAAGACCAGGCAGAAGCCGAGCAGGATGCAATTTACGGCAGCATCATGTTGCTGAACGCAACCAATATTGAGTACGAACTGCTGGCTGTTGGCCGTCAGTATCGTATTCCGGCATCAGAAATCGGCAAGGCGTTGGTTAAGACCGACCTGAAAGACCCGCGTAACAGCGATTGGGCCGATTTGATGAAATACCCGCCTATCATCGCGCCTATCGATCCTCCGAAGGATTTGGACGAAGCTATCCTGCGTGATGAAGTTGTTAAGGCATTGAATGATATCCGTCTGGGGATTATTGCTCGTGCAAGTGAACTGGACGAAGCGTTTACCGACGTTACTAACCTGATTTTCGAAAACGGGAAGAAGGTTTTTGACGATGAGATGTATCAGCACCACCTGAACATGAACGCGCACCATTACACTTGTGCTGATATCCGCGCATTGCCGGTATTAGGTAAAGCCGTAGATGCGACGAAAGCGTTTGGCCGTACCCTGGCTGAGCTGGTTGACTTGATGTCGACGTCTGGCATTCAACAAAAACACGTTGACATGTTGCTGGACAACACACTCGGTGATTTGCTGGGGCGTATGCGTGTGCTGAATAACGACGCTATTACGTTCCAGACAACCACAGGTCACGTCATCAGTGTGAAGGGTGAGAAGTTCATCATCACTTCACCACAACCGATGTTTTTGAAAGCCGACCAGGATAATAACGATCCGGGGATTGCGACGGAGTTTAGTGCGGGGTTGAACACACTGTACGTCCACTCTGGGACAGCGGCTAACGTGAAAGCGCCGGTGTATAATGGGGTGTATCTGGTAACCCCGGATATGGTTGGGTTGTATTTAACCTCAGTAAAAATCCTGCCCGCAAACGCCTATTTTAAATCCAGCGATACGCTGAAGATTTATGGCTCGGGTAAGCAGACCAACCGCGTGTACATGAACGCCGAGTTACCAGGCGCAACCACTACGGTAGAAGGGCTGTTTGCAATTACCAATCTGTCCACGTCCGTAGCAGCATCCACCGCTATCTCGCAGAAAGCGGTAACCGACCTGAAAGAGTTACTGGATAACTACGTCGATGACACGTACACCATTAACGGTAAAGCGTTCATTAAAGACAGTAACGGTGAAATGCATCTGACGTTAACGGCTGCCGATTTTGGCGTTGACAAGATGAACAACACCACGCCGTTGGCTAAGCCGGTAACAAACGCACTGAAAACGGTGCTGGCCGGGAAGGTGGCGTCTGACCACACCCACACCATTGCCGACTTGGACAACGTGCCGTATGCTTCGACGTCGACGACAGGTCTGGCGAAACTGTGGGACGCAATCGACACAACCGCAGATAAGATGGTGACGTCGCGTCAGGGTTTCCTGCTTGACGAGCGCATCAACGAGATGAACGAGAAAATCAGCACACTGCTTCCTGCGTGGACGGTGGGTGGTGCCCAGTACGGGAACCAGAGTTTCTTGCCAATTCCAACCGTCAGTAACTTCGCTGGTTTCGGATTTAACCGTGCTAATCCGTGGGGTGCAGCACGCTATGAAGCGGGTAATGTCTACATGCTTCGTAACGGCTCTGACGGCCCGGAAGACACTCGGCGTGTTTATTACTGGTACGGCAATGTCGACGCGAACAACAAGTTCACCAACACATACCCGACCGCGTTTCCTTATCATCCAGCTGGGATGTCGAAGTTCCCTGGTGTAACGCTGTTGCGGGTATTAACGGCCAGTGAAGACGTCGGCCTGTTTGAGGGCAGCGACGGGGCGAAGTATTTGGTATTGTTCAACGGTACCATGAACTACGCCAAACATTCGGAAGTCTATAAAGTCACCTTCCCGGATCTCACCAGAACTACGGGTGGTGCGCTGACCTATGATTCAGTGATGTCTTTCATCACTGTGGCACTGGCGAAGACACACGTTGTCTTCATGATGACACACGTTACTAGCGATAGCTTTAAAGTGGGCGGGTGGTCTGTTGCGTTGAACGCATTAAAAGGGACAGACCCGATTGCCTTCTCCGTGATACCTCTCAGTTACGCGAAAATGAACGGTGATGTTGCCCAAATTGTTGATGATGGCGCGCCTGAAAACGACAACACCGCAACTACTCGTTTAGCGTACGTGACCCAGGGTGCCCGTGATAAATGGACTCGAACCCGCACGCCGGTTAACTACCGCCCGTCGTTCTTTAGCGCGGCGAAACTGAATAACGTTCGTGTGCGTTCTGAGATGCACTCGTATTTCGCGGACGATAAAAGCGCTTCGTGGTCGGATGCCTGGTCTGTCGTGTACAACGTGGATATCGACACGGGTGTATTAACTGTTGAGAACCCACTCTTCCCAGTAGCCATCACCGAGAATAAAATCGAGTTCCCGAACGGAACGCGTTATAAGTCAGTCACTAACCGTAACATCGGTGTGGCAATTTACGCAAACTTGTTCGCTAACGCCGACTTCATGATTGACTCTTGGAGCGACGTTTACTCGAATAACCCGACGAACATCTCAATCACACCGTTAGCAGGTACCGAGTTCTACGACCTGTTAGGAAGTGACACTACGTTGAACGAGTCCAGCAACGTACAGGTGATTGGGGCAGTAGGTTCGGTCTACAAGCAATACATGCGGGGAATTATCCATTTAGGTGGTGCAGAACGCACGATGTTGTTGCGCTATCTTGCGACCAGCACCTGCATTTCCATGCGTTACGACTTGACCAATAAATACTTCCCTGATGCAGTTGGCTACGGCCCTGATAACTTGCGTGTCGCGCAGGACATCAGTACCTACAACGAGTTCGCTTTGACGCCGAATGTCTGGAAAGGCAACAAGCTGTACCTGAACGGGCGGGTGATTAATGCGGCGGGAAGTTATCCTTACAAGAATGTCGACGGTACAACCACTTTCACCGCAGACCGGATTACCGTGTCTGACGCATTGTGGGCGAGCCTCGAAACCGCGATCGGTGCAGCACTCCCTCTGTGGAATGATGCTGAGACCATCGATAAGCAGTTCAACGTACACACCTTCGATATCGGAGGTCTGAACGCTGCGTTCTTGGTAGCGACCTGTCGTACCTGGGAAAACGCTGACCATATCCGCGCTTATTGCCGCACCACTGTCTGGAAAATTCCGATGACGGTGAATAGCGGTAATGTGTCGTTTGGTACAACGGGTTGGGTCGTGGCTGTGCCGGAATGGCGGGATGGTGAGGCAGCAATCTCACTGATGCGCGATCAAGTGGTGAACTCGAAGTTGGTTGCGCGAGACGACGGGTATGTCATTCAGTTGGGTGCTATATACCGCAGCGGTGTCGTTGGGGATTCACGTTGGCGTACGTACGTGATGACCTGCGATCAGTCGTTTGACAACTGGACAAACACCATGCGGGCGTTTAATCCGGGGATTGCTGAGGCTGATTTGTATATTCAGCCAGAAACGGGTTATATCGGCTACACCAAGTGGTTGTATCTGGGCCTGTACGTGGCTGCTGATATTTATCAGAACACTTCTCGAACGTTCGCAACTGGAACACCGGTTGAAACGTATCTGGCGGGTGTAAAAACTGCGGAAGGCTGGAACCTGTACATCACCGAGGAAGAGTTGCTGTCGTTTGGCTCGTCACGTTATACCATCCCGACCTACGGTGTGGACATTCGTGACTTGTATCCAACGAACTACAAGAATCGGACGTTGTACATGCACGCGGTGCTTAACAACGGTAATCCGGAATACCAACTGCTGGAACAACAGATGCCCGATACGTCAACGCGACTGTACATCGGGTATATGACCAGTGACTCAGAGCGCATCACGTTCAGTAACTTTGATCGTGTGAAACGTCTGGGTGCAGTTAAACAGCTTCTTGAGCACGAATCTGTTGCCTATCGTCACGATATGGACGTGGGTCGTGACCAGAAACTGGGCAGACTGGGGCCGTTGTATAAGGAACCTATCGGGGCCATCGCTACGGACTCCTCTCACGGGTATCTCGACAGTCAACAGCTCTCGAGCGTGGTGGCGGGACAGAAGCGCACCAGAAAAGGCGTCAGCCAGGTGTTTAGCGGATTGTCGCAGGCTTTGATTACTACACAGTCGAATACTGCGTACAAATACTGGAAGAAGCCAACGAACATCGTGTCGGTTACGGCGGATGAGAGTGCAGAAGGGGCCGCGTACGGAATGCAGTGGATAGGTGTCCCTCAACCGGCTGTTGTACCTGCAACAACCGACATGGGCATCCTCGTGCGTGGCAAGTACATTATCCCTGGCACGGTTGGTGATTCCACCGCGTTCGACGTTCGGGTTCTGCTTCCGTTTGGTTCTTCTGGTACGATCATTAATACCGAAGAGCCTGGGGTCGATGTCGACATGGACAACGATCCTAACGCTCTGGAGACGCCGGCAGATGGCAGCGTTGTAACGTTACGACGTTACTCCCCCGCTGGGATTGCGTGTACGATTACGATTCTGGTGGCTATCCCGAAAGACCCGTTAACGGACTTTGGTCTGCGTGACGTTGCATGGCAAATCGTCGACCTCGGCGGTAATGTGGTGGCGCAAGGTGACGAGTCCAGCTATATCGGGATCGTGCCGTTGGGTACCGCAACGCTGGGTACGCCTGTCGTGTTTAATGCTCGCACTTATACCTTTACGGACGTTGATGGTGCTATTCCGTTTGTGACAACTGGCGCAGAAGGGATCGCACCTGCACTGGTTTCCACTCCACTCGGAAACGGTGATACTGAAATCACGGTCGCTCATCACTTCATGAATGAACGTGGCGAACAAAAGCTTGACGAGGTGCAGGTCAATCTTATGTTCCGTACCTAA
Genome Context
Genome Context
Tertiary structure
PDB ID
9c45e6a5353c26b5e6ee5aaf20694260a107eee7476fc270aefddeb716593f00
Model Confidence
Very high
pLDDT > 90
pLDDT > 90
High
90 > pLDDT > 70
90 > pLDDT > 70
Low
70 > pLDDT > 50
70 > pLDDT > 50
Very low
pLDDT < 50
pLDDT < 50
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Complete genome sequence for lytic Bacteriophages STsAS and SPAsTU against Salmonella enterica serovar Typhi and Paratyphi A | Sanirbandha,C., Yukgehnaish,K., Sivachandran,P., Lee,S.Y., Lalitha,P. and Ravichandran,M. | — | — | GenBank |