Protein

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Genbank accession
YP_009835338.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,85
Protein sequence
MSDYSELKNKFKTGDTPTGEEYAELIDLAGGANDKAQNAVVDNHDGSITVNGNKFTPVNDNKDNSMQLNGTKVVPVSDDGNGAIHFNGKSMVPVKDNQDGTITVNNQTYQPANADLVANNSDFAGTSAISRGQLSSTQVLGELQDGIYGFGQTDTQWPDGPEQLKGKPIWGSLEQWTKGGPTFQRIYTNQQEEWWRQKSGAPAVWGSWDKNAKSSDIQNSNTVSNQFPFRAIISSFSGANLMHLDLYWTNDYATFFPINKSIPNNTGQVRDPSIAYFDGRFWIAYTWGVYYSYDLIDFTPVNLPAIKQGVSNWAPEWVVNGNDVYLMATSGSVEIWGSTADFRSYWCTFDYNNLQFTPWQGLDYNNPTGVWTNIDNTATYYNGSWWLAMKDEYHYGQADYFPKIRLYKSSQPVGGYQYVTDIPFTQKVEGVSLIVADGIMICYADAFEIGATYRLESNNGTTWVNERNVVSSDGSRTQHFTVLPLTSEEQQRTIQKAISYYQPSLAGSGVANFRTSIPRIPLNAGVNELYPRQGIEYYYHITGDVPTGSLVEVNLHMDYNYGYSKIHFENDNGSGTVTLRINRNDAFYAPNGAPYWETTTYDSPVTLVSVGSDDWAGVPSKPYKIVSDPNDRRGGANYLIGTGSGFQFTAPGVNQVGSIMGAYQVSARAVGKALSGQPIIVGFDITVSNGDGGKLFFGFTGGGDWTATYLNRPFPTGTYHITQIVMLGRDLHIGDQMRITVDNSAATYAISNVMMTIGTQEHDWQAAPEDHQLPIEAISTNSDTNLDSLPANGDFTFGGTISWQGGPSPLSGQSRWGYLKQVFVATGAVTFQTIYTNQSEVFFRQRSGYPSTWGDWLRVGMTQVGTV
Physico‐chemical
properties
protein length:867 AA
molecular weight: 95715,35030 Da
isoelectric point:4,77660
aromaticity:0,12803
hydropathy:-0,44567

Domains

Domains [InterPro]
DC_1223
ATT
1–227
DC_1223 IPR023296 DC_1565
IPR023296
STR
270–482
IPR023296
YP_009835338.1
1 867
Architecture
ATT
STR
RBD
ATT 1-227 | STR 263-482 | RBD 596-846 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009835338.1
1 867
Domain Start End Length (AA) Confidence
N-terminal 1 323 323 0,8477
Central domain 324 528 206 0,4492
C-terminal 529 867 338 0,1235
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-323
Central
324-528
C-terminal
529-867

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage LpeD
[NCBI] 		2041210 Uroviricota > Caudoviricetes > Herelleviridae > Elpedvirus LpeD >
Host Lactobacillus
[NCBI] 		1578 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009835338.1 [NCBI]
Genbank nucleotide accession
NC_048677 [NCBI]
CDS location
range 60081 -> 62684
strand +
CDS
TTGTCAGATTATAGTGAATTAAAGAATAAGTTTAAGACTGGTGACACGCCAACTGGCGAAGAATACGCTGAGCTAATTGACCTAGCTGGGGGAGCTAATGATAAAGCCCAGAATGCTGTTGTTGATAACCATGATGGTTCAATCACTGTTAATGGTAATAAATTTACACCTGTTAATGATAACAAAGATAATTCAATGCAACTAAATGGTACAAAGGTAGTTCCTGTTTCCGATGACGGAAACGGGGCTATTCACTTTAATGGAAAGAGCATGGTACCTGTTAAGGACAATCAGGATGGTACTATAACAGTGAATAACCAGACGTATCAGCCCGCTAACGCTGACTTGGTAGCTAACAATAGCGACTTTGCTGGTACTAGTGCTATTAGCAGAGGACAGCTTTCAAGTACACAGGTACTAGGAGAGTTACAGGATGGTATATATGGTTTCGGTCAAACAGACACGCAATGGCCTGATGGGCCTGAGCAATTAAAAGGAAAACCCATCTGGGGTTCGTTAGAACAATGGACTAAGGGTGGTCCAACTTTCCAGCGCATTTATACAAACCAGCAAGAGGAATGGTGGCGACAGAAATCAGGAGCACCTGCTGTATGGGGTTCTTGGGATAAGAATGCTAAGTCATCAGATATTCAGAATAGCAACACGGTAAGCAACCAGTTCCCATTTAGAGCAATTATTTCATCATTCTCAGGTGCTAACTTAATGCACTTAGACTTGTATTGGACGAATGACTATGCAACGTTCTTCCCCATTAATAAGTCAATTCCTAATAACACTGGTCAAGTGAGAGACCCTAGTATTGCCTACTTTGATGGTAGATTCTGGATTGCTTATACATGGGGTGTATATTACTCGTATGACTTGATTGACTTTACCCCAGTAAACTTACCCGCAATCAAGCAAGGGGTATCTAATTGGGCTCCTGAGTGGGTTGTAAACGGCAATGACGTATACCTAATGGCTACTAGTGGTTCAGTTGAAATATGGGGTAGTACAGCCGACTTTAGGTCTTATTGGTGTACCTTTGACTATAATAACTTACAGTTTACGCCGTGGCAAGGGTTGGACTATAATAACCCTACTGGTGTGTGGACTAACATTGATAACACTGCAACCTATTATAATGGTAGCTGGTGGTTAGCAATGAAAGATGAGTACCATTATGGGCAAGCAGACTATTTCCCCAAGATTAGATTGTATAAGAGTTCTCAACCAGTAGGTGGGTATCAATATGTAACAGATATTCCATTTACACAAAAGGTTGAAGGGGTTAGTTTGATTGTCGCTGATGGAATTATGATTTGTTATGCAGATGCCTTTGAGATTGGAGCGACTTATCGGTTAGAATCTAATAATGGTACCACTTGGGTTAATGAACGTAATGTTGTTTCTAGTGATGGTTCTAGAACACAACACTTTACAGTGTTACCCTTAACAAGTGAAGAACAACAGAGGACGATACAGAAGGCTATATCTTACTATCAACCTTCTCTAGCAGGCAGTGGTGTAGCTAATTTTAGAACTTCAATCCCTAGAATACCACTTAATGCAGGAGTTAATGAGCTGTACCCAAGACAAGGAATTGAATACTATTACCACATTACTGGCGATGTACCTACTGGTAGCTTAGTAGAAGTAAACTTGCATATGGATTACAACTATGGGTATTCAAAGATTCATTTTGAGAACGATAATGGAAGTGGTACAGTAACTCTTAGGATTAATCGTAACGATGCCTTCTATGCCCCTAATGGAGCGCCTTATTGGGAGACAACAACTTATGATTCTCCAGTAACATTAGTGTCTGTTGGTTCTGACGACTGGGCTGGCGTTCCATCTAAGCCGTATAAGATTGTATCAGACCCTAATGATAGACGTGGTGGCGCTAACTATCTTATTGGAACTGGTAGTGGATTCCAGTTTACTGCTCCGGGTGTTAATCAGGTTGGTAGTATTATGGGTGCATACCAAGTATCTGCTAGAGCTGTTGGAAAAGCTTTGTCTGGTCAACCTATTATAGTTGGGTTTGACATTACTGTATCTAATGGTGATGGTGGTAAATTGTTCTTTGGGTTTACTGGCGGTGGCGATTGGACGGCAACGTACCTTAACAGACCATTTCCTACTGGTACTTACCATATTACTCAGATAGTTATGCTAGGGCGTGACTTGCATATAGGTGACCAGATGAGAATCACTGTTGATAACAGCGCGGCAACTTATGCTATAAGTAATGTAATGATGACCATTGGTACCCAAGAGCATGATTGGCAAGCGGCCCCAGAAGACCATCAGTTACCCATTGAGGCTATATCAACTAATTCTGATACTAATCTTGATAGTCTACCAGCAAATGGTGATTTTACATTTGGTGGTACAATATCTTGGCAAGGAGGTCCTAGTCCACTAAGCGGCCAATCCAGATGGGGATATTTAAAGCAAGTTTTTGTTGCTACAGGTGCGGTAACCTTTCAGACTATATACACCAATCAGTCAGAGGTATTCTTTAGGCAGAGGTCTGGATACCCTTCAACATGGGGTGATTGGTTGAGAGTTGGGATGACACAGGTTGGAACGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
2c87dc328a770f5b47b6c42c258b5dbaf4fd4b307f279fa78732badca08c0915
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7125
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Characterization of phages of Lactobacillus pentosus and plantarum Qi,R., Yu,M., Qiao,X. and Li,Y. 2012-01-19 — GenBank