Protein

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Genbank accession
YP_009196391.1 [GenBank]
Protein name
long tail fiber protein distal subunit
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MALLKSGSTVGGNLIWHQGILPIVPAGDSVFFKNYKIYSEKDKPSKAEVGLGNVTNDAQVKKSGDTMTGNLKIDTVGNAILDLKSIRIRADTSDQLVLSTEKKTMYFRVNGNDSSEGQMTIDNSGTVRGSRFIVTDAQNGSAGALTRKDYVDGKVTALEQTTSNLANTKVAKAGDTMTGNLTAPVFLLSAGQNSAANSATRKDYVDGRANEKVAKAGDTMTGLLSANQGVSVNSSGSNKTNGIYPGNGDASTWETCNVDIKSWYGIGIRSDLGDGKRTVVINARTGDVSTKGTFASETNVRSPRIDTDVIYRRSGTAFVAADGNLNLVFSGGSHSSGFKNGYLLEQIKGFLDTKPTFKQSLGANRQLNDVREPGFYYQDANANTSAALNYPENAAGSLEVYQAAGIIQIYRVYNTGRSYQRAFYSNGPWTAWTRNFSYGDPALAIGYQGVSGLGDNSIAIGDNDTGFRQVGDGILEVVANSQRVGQFTTGHAYFDKEILGPTIVSRSGSIYSRGDGNSHFWLQTSNGTEKGVIYSGADKVFHYRCSGGSHVFENRINISNPGGQESVRVNNQITGERGCMVGGLVQRGGWGDWRSRGAGMLVETNSEGASNVWKAVHWGRDWIAGMDIYSAPDGVYQAQLHVGGANFLYNSAGDFQSHRDVNANNVYIRSDERLKNNFRKIENAVDKVEQLTGFIYDKKISLEDENYTETEAGIIAQSLQKVLPEAVSEREGLLNVSSAGVNALLINAINELSERLKKLEGEK
Physico‐chemical
properties
protein length:763 AA
molecular weight: 82197,04540 Da
isoelectric point:6,79092
aromaticity:0,08388
hydropathy:-0,44404

Domains

Domains [InterPro]
DC_0466
STR
1–190
DC_0466 IPR005601 cd19958 IPR030392 Coil
DC_1389
STR
182–271
DC_1389 DC_0000
IPR030392
CHP
670–763
IPR030392
Coil
Unmapped
671–691
Coil
YP_009196391.1
1 763
Architecture
STR
STR
STR 1-331 | STR 358-763
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009196391.1
1 763
Domain Start End Length (AA) Confidence
N-terminal 1 223 223 0,4646
Central domain 224 431 209 0,3502
C-terminal 432 763 331 0,7612
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-223
Central
224-431
C-terminal
432-763

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage S13
[NCBI] 		1327935 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009196391.1 [NCBI]
Genbank nucleotide accession
NC_028773 [NCBI]
CDS location
range 2988 -> 5279
strand -
CDS
ATGGCACTATTAAAAAGTGGTTCAACAGTCGGTGGGAACTTAATTTGGCATCAAGGTATTCTGCCTATTGTTCCGGCCGGTGATTCAGTATTTTTCAAAAATTACAAAATTTATTCAGAAAAAGATAAACCTTCAAAAGCGGAAGTAGGACTTGGTAACGTAACAAACGATGCTCAAGTTAAAAAGTCTGGCGACACAATGACCGGCAATCTTAAAATTGATACAGTTGGTAACGCAATATTAGACCTTAAAAGTATTCGTATTCGTGCGGACACATCAGATCAATTGGTATTATCAACCGAGAAAAAGACGATGTACTTCCGAGTTAACGGAAATGATTCATCAGAAGGTCAAATGACAATCGACAATTCCGGAACAGTTCGTGGATCAAGATTTATTGTAACAGATGCTCAGAACGGCAGCGCAGGAGCACTAACTCGAAAGGATTATGTTGACGGAAAAGTTACAGCACTTGAACAGACCACATCCAACTTAGCAAACACGAAAGTTGCTAAAGCTGGTGACACAATGACCGGTAATTTGACTGCTCCTGTGTTCCTCCTAAGCGCAGGTCAAAACAGCGCTGCTAATTCTGCTACCCGTAAAGACTACGTTGACGGTCGCGCCAATGAGAAGGTGGCGAAAGCTGGTGATACAATGACAGGTCTGTTATCCGCAAATCAGGGTGTTTCCGTTAATTCATCAGGAAGCAATAAAACGAACGGTATCTATCCCGGTAACGGTGACGCTTCAACATGGGAAACGTGTAACGTTGATATTAAATCTTGGTACGGAATCGGTATTCGCTCGGATTTAGGTGATGGAAAAAGAACTGTAGTTATTAATGCCCGAACGGGTGACGTTAGCACAAAAGGAACATTCGCTTCCGAAACAAATGTTCGTTCTCCCAGAATTGATACCGATGTTATTTACAGAAGAAGCGGAACAGCGTTTGTCGCCGCGGACGGTAACTTGAATCTTGTATTTTCCGGTGGTTCACACTCAAGTGGGTTTAAAAACGGATATCTTCTTGAACAAATCAAAGGATTCTTGGATACGAAACCGACGTTCAAGCAAAGTTTGGGTGCTAATAGACAGTTAAACGATGTAAGGGAGCCAGGATTCTATTATCAAGACGCAAACGCAAATACGTCCGCAGCGCTGAATTATCCCGAAAATGCCGCAGGATCATTAGAAGTTTATCAGGCAGCGGGTATTATTCAGATTTATCGAGTATATAACACCGGACGAAGTTATCAGAGAGCGTTTTATAGTAACGGTCCTTGGACTGCATGGACAAGAAACTTCTCTTATGGAGATCCAGCTCTTGCAATTGGTTATCAAGGTGTTTCTGGTCTCGGGGATAACTCTATTGCAATCGGTGACAATGATACAGGATTCAGACAAGTCGGTGACGGTATTCTTGAAGTTGTCGCAAATAGTCAACGTGTTGGACAATTCACAACCGGACATGCATACTTTGATAAAGAGATTCTAGGTCCTACGATTGTTTCTAGAAGCGGATCAATTTATTCGAGAGGTGACGGAAACAGTCATTTTTGGTTACAGACAAGTAACGGAACTGAAAAAGGTGTTATCTATTCCGGTGCTGATAAAGTATTTCATTATCGCTGTAGTGGTGGAAGTCACGTCTTCGAAAACCGAATAAACATTAGCAACCCCGGTGGTCAGGAATCAGTTCGAGTTAATAATCAGATTACAGGCGAAAGGGGATGTATGGTCGGTGGACTTGTTCAGCGAGGAGGCTGGGGAGACTGGAGAAGTCGCGGTGCTGGTATGCTTGTCGAAACCAATTCCGAAGGTGCATCAAACGTATGGAAAGCAGTTCATTGGGGTCGAGATTGGATTGCAGGAATGGACATTTATTCTGCCCCTGACGGTGTATATCAGGCTCAGCTACACGTAGGTGGTGCTAATTTCTTGTATAACAGCGCAGGTGATTTTCAATCACATCGTGATGTCAACGCTAACAACGTTTATATCAGATCTGACGAAAGACTCAAGAACAATTTCAGAAAAATCGAAAATGCGGTTGATAAAGTTGAACAACTGACTGGATTTATCTACGACAAGAAGATTTCACTGGAAGATGAGAATTACACGGAGACAGAAGCCGGTATCATAGCTCAAAGTCTTCAAAAGGTCTTACCTGAAGCTGTTTCCGAAAGGGAAGGACTGCTTAACGTTTCAAGCGCAGGTGTTAACGCACTTCTTATCAACGCAATCAATGAACTTTCGGAACGATTGAAAAAACTTGAAGGAGAAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a1a60fa90760188caf48562ad63fdf4a01dfe5702599c7302316535ac03cc903
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6396
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage S13 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank