Protein

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Genbank accession
ABK00171.1 [GenBank]
Protein name
p24
RBP type
TSP
Evidence RBPdetect
Probability 0,86
Protein sequence
MDAGLRIINDSGVVQIDSTYSNYYLHSKQVVTLAAVPGFPRVSQVTVAPPYPSQCLIALGGAAPVTIKGQTSNQVWIESSNDFIGSAVTVYYFVPANLSPLVGTGEGGLRVYGPTGALVFDNSAKMVKILGYVPDANGSSGLDTGISGQYAAVVLNDAYYISYNRVSGGQANNNAEWTQTVSRAYVRPTQTGLTFYGTTEVRGPFTASDNPPPNPVYIGPMSVLLVDVTNY
Physico‐chemical
properties
protein length:231 AA
molecular weight: 24434,12090 Da
isoelectric point:4,95542
aromaticity:0,10390
hydropathy:0,03680

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABK00171.1
1 231
Domain Start End Length (AA) Confidence
N-terminal 1 210 210 0,1469
Central domain 211 220 11 0,0213
C-terminal 221 231 10 0,9970
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-210
Central
211-220
C-terminal
221-231

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xop411
[NCBI] 		2913975 Uroviricota > Caudoviricetes > Xipdecavirus >
Host Xanthomonas oryzae
[NCBI] 		347 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABK00171.1 [NCBI]
Genbank nucleotide accession
DQ777876 [NCBI]
CDS location
range 18647 -> 19342
strand +
CDS
ATGGATGCAGGTCTTAGGATTATAAACGATTCTGGGGTTGTTCAGATTGACAGCACATACTCTAACTACTACCTACATTCTAAGCAAGTTGTTACACTCGCGGCAGTACCGGGGTTTCCTAGAGTATCCCAAGTTACCGTTGCGCCACCCTACCCAAGCCAGTGTCTTATAGCACTAGGTGGTGCTGCCCCTGTGACAATTAAAGGCCAGACATCTAACCAGGTTTGGATAGAGTCATCAAATGATTTTATAGGATCTGCTGTAACAGTTTATTACTTTGTCCCTGCAAATTTGTCCCCTCTTGTAGGTACGGGTGAAGGCGGTCTTCGGGTGTATGGCCCGACAGGGGCGCTGGTTTTTGACAACTCTGCAAAGATGGTTAAAATATTAGGTTATGTACCCGACGCTAACGGATCGAGCGGTTTAGACACGGGCATATCTGGGCAGTATGCAGCAGTAGTTCTTAATGATGCATACTATATATCATACAACCGCGTGTCAGGTGGACAAGCGAATAATAACGCCGAGTGGACCCAGACGGTTTCACGTGCTTATGTTCGGCCAACACAGACTGGGCTCACTTTTTACGGTACAACTGAAGTGCGTGGACCCTTTACTGCAAGTGATAACCCCCCACCGAATCCGGTGTATATTGGTCCGATGTCGGTTCTTCTTGTAGATGTGACGAATTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
63b0874623d3f35b7aa7cef81a7efdcde6b71a688424189ded544f80606f1969
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8807
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparison of genomes of three Xanthomonas oryzae bacteriophages Lee,C.N., Hu,R.M., Chow,T.Y., Lin,J.W., Chen,H.Y., Tseng,Y.H. and Weng,S.F. 2007 18045507 GenBank
Comparative Xanthomonas oryzae phage genomics: insights into HNH endonucleases Weng,S.-F., Tseng,Y.-H., Lin,J.-W., Lee,C.-N., Chen,H.-Y. and Chow,T.-Y. 2006-12 — GenBank