Protein

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Genbank accession
WYW00535.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFPNQGAQQINGWSSETQGLQKRPPTKFIKRLGAPGSWGAKPLVHLVNRDASEQYYMVFTGGGVAIVDLQGNSYQVRGYDGYANCADPRGDLRLITVADYTFVVNRRTVVQMGNELTHAGYRNLNTRALVPCRGGQYGRTVTVEVLIDVTWVKLAELALPSGVGEPGVVEGMVAKVDAQNMIKELVTQVNTNGAPWKITAGEYPGCMLLHRDDGGEFGGIRTKDGYADQLINGFIYQVQSFNKLPAQAPEGYLVEITGEATRSGDNYWVRYDGAGRVWKETVKPGIIAGLNRATMPRGLVRAADGQFDWKVLDWNNRGCGDNETNPLPSFVDGTINDVFFFRNRLGFLSGENVILSRSSRYFNFFPPSVASLSDDDPLDIAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSQGILSPKTVELDLTTEFDVQDTARPFGIGRGVYFSAPRAAYTSLKRYYAVQDVSDVKNAEDVSAHVPSYIENRVFNIHGSGTENYVTLLSDGAPGIVYIYKFLYMAEDIAQQSWSHWEFGTQVNILACASIGSYMYILMDRPEGIVLERMEFTAFTKDFPVEPYRTYIDGKVTTVCSEFDEDLFLSYINLSSLYGGAPGAQESYWTIDTDGVGQQHAPPKGGWASDPRIVLQGDQRGKTYIVGRSYTFLYEFSKFLIKQTADDGSTATEDIGRLQLRRAWLNYESSGSFEINVNNNNGRNTDNDFVYVMAGGRLGAEVRLGELNLGTGQFKFPVTGNAQNQRVTIVSDTPNPLNVIGCGYEGNYIRRSSGI
Physico‐chemical
properties
protein length:806 AA
molecular weight: 89113,98290 Da
isoelectric point:5,35352
aromaticity:0,11042
hydropathy:-0,28474

Domains

Domains [InterPro]
IPR058003
TTP
1–806
IPR058003
WYW00535.1
1 806
Architecture
TTP
TTP 1-806
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYW00535.1
1 806
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,9925
Central domain 147 356 211 0,0669
C-terminal 357 806 449 0,1185
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-356
C-terminal
357-806

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PpuP-Torvandi
[NCBI] 		3132636 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYW00535.1 [NCBI]
Genbank nucleotide accession
PP496432 [NCBI]
CDS location
range 25129 -> 27549
strand +
CDS
ATGGGTCTGGTTAGTCAGTCCGTAAAGAACCTGAAGGGTGGCATTAGCCAACAGCCGGACATCCTCCGGTTCCCCAATCAGGGTGCGCAACAAATCAACGGCTGGTCGAGCGAGACCCAAGGTCTTCAGAAGCGACCGCCAACGAAGTTCATTAAGCGTCTCGGGGCACCGGGTTCGTGGGGCGCTAAGCCTCTCGTCCACTTGGTCAACCGTGATGCGTCCGAACAGTATTACATGGTGTTCACTGGTGGCGGTGTTGCCATTGTGGACCTTCAAGGGAACAGCTATCAGGTTCGTGGTTATGACGGATACGCCAACTGTGCGGACCCTCGTGGTGACCTGCGCCTGATCACTGTGGCCGACTACACGTTCGTTGTGAATCGCCGCACCGTTGTCCAGATGGGCAATGAGCTGACCCATGCTGGTTACCGCAACCTCAACACACGGGCGCTCGTTCCGTGCCGTGGTGGTCAGTATGGGCGAACGGTCACCGTTGAGGTTCTTATCGACGTGACGTGGGTGAAGCTGGCCGAGCTGGCCCTGCCTTCGGGTGTGGGCGAGCCGGGTGTGGTCGAGGGCATGGTTGCCAAGGTCGATGCGCAGAACATGATCAAGGAGCTGGTGACCCAAGTGAACACTAATGGCGCTCCATGGAAGATCACCGCTGGCGAGTATCCGGGCTGCATGTTGCTTCACCGCGATGACGGTGGAGAGTTTGGTGGTATCCGCACCAAGGATGGCTACGCTGACCAGTTGATCAATGGCTTCATCTATCAGGTCCAGTCGTTCAATAAGTTGCCCGCTCAGGCCCCTGAAGGTTACCTCGTGGAAATCACCGGGGAAGCCACACGCTCAGGCGACAACTACTGGGTCCGTTACGATGGCGCTGGCCGAGTCTGGAAGGAAACCGTTAAGCCGGGGATCATCGCTGGGTTGAACCGGGCGACAATGCCTCGTGGTCTGGTCCGTGCGGCTGACGGTCAGTTTGACTGGAAGGTCCTCGACTGGAACAACCGTGGCTGTGGTGACAATGAGACCAACCCGCTGCCATCCTTCGTGGACGGTACGATCAACGACGTGTTCTTCTTCCGTAACCGTTTGGGGTTCCTCTCAGGCGAGAACGTGATCTTGAGCCGGTCGAGTCGGTACTTCAACTTCTTCCCACCAAGCGTGGCGAGCCTGTCCGATGATGACCCACTGGACATAGCGGTATCCCACAACCGTATCTCGATCCTCAAGTACGCCGTACCGTTCTCTGAACAGTTGCTGCTGTGGTCTGACCAAGCTCAGTTCGTGTTGTCCTCTCAGGGCATCCTGTCTCCCAAGACGGTGGAACTGGACCTGACCACTGAGTTCGACGTACAGGACACTGCTCGGCCTTTCGGTATCGGACGTGGTGTGTACTTCTCGGCCCCTCGGGCTGCCTATACGAGCCTCAAGCGTTACTACGCAGTGCAGGACGTATCGGACGTGAAGAACGCCGAGGACGTATCAGCGCACGTTCCGAGCTACATCGAGAACCGGGTGTTCAACATCCACGGCTCGGGTACGGAGAACTATGTGACCCTGCTGTCTGATGGGGCACCGGGCATCGTGTACATCTACAAGTTCCTCTACATGGCTGAAGACATCGCGCAACAGTCGTGGAGTCACTGGGAGTTCGGTACTCAGGTCAACATCCTTGCCTGTGCGTCGATTGGCTCCTACATGTACATCCTGATGGATCGCCCTGAAGGGATCGTACTGGAGCGCATGGAGTTCACAGCGTTCACCAAGGACTTCCCTGTGGAGCCTTATCGGACCTACATCGACGGGAAGGTGACAACCGTGTGCAGTGAGTTCGATGAAGACTTGTTCTTGTCGTACATCAACCTGTCCAGCCTGTATGGTGGCGCACCGGGCGCACAGGAATCCTACTGGACCATCGACACGGATGGCGTAGGGCAGCAACACGCACCTCCGAAAGGTGGCTGGGCGAGCGACCCACGGATCGTCCTTCAGGGTGACCAACGGGGCAAGACGTACATCGTTGGCCGTTCCTACACGTTCCTCTATGAGTTCTCGAAGTTCCTGATCAAGCAAACCGCTGATGATGGGTCCACGGCAACTGAGGACATTGGTCGGTTGCAACTCCGTCGAGCTTGGCTGAACTACGAGTCTTCGGGTTCGTTCGAGATCAACGTGAACAACAACAATGGCCGCAACACGGACAACGACTTCGTGTACGTCATGGCTGGTGGCCGACTCGGCGCTGAGGTTCGCCTCGGTGAACTGAATCTCGGGACTGGTCAATTCAAGTTCCCGGTAACGGGTAACGCCCAGAACCAACGGGTGACCATCGTGAGCGACACACCGAACCCACTTAACGTGATCGGCTGTGGCTATGAGGGTAACTACATCCGTCGATCCAGCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3f23d9257a120df3413e9ab941aefd1d6a25fb9f14f787a89dcc6269b050da02
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2879
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a phage collection against Pseudomonas putida Brauer,A., Rosendahl,S., Kangsep,A., Rikberg,R., Lewanczyk,A.C., Horak,R. and Tamman,H. — — GenBank