Protein

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Genbank accession
WBK39766.1 [GenBank]
Protein name
capsid protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MGLLADGWTKRQTISIQPTTAALAEFTAVLTEAMLPSVVTDVLFDAIDGALTTGGDLRISVDKDGDTLVGLDFRRWDKAAGKIEIAYRVPTTSALLITTLYLWWGKEGAEQPAANELGGQHSAYDDDTIFCAPVGSGVNRTAFNITGTDVGDITAGDIAAPSGLLGTQHTDVGDYSTYGDNPDLDLVNTDWTMSFLFRATTSGLEQYVLGKYDHTTQNRGYLCIFSGSQHFDLTYQPVRTSYNPIYRLSSGVDVVDGQWHHLAGTFISGTRASVYVDGILRNTTTNNIPSSIASNNASFQIGTQVTAQNRPADFSHVTVHSVARSAEWLKAENDNFRDPNSFYDAFPAPDYVSEITTSYDLRLNVSVDTSIAYSFDYTTELIVERAVTILYDLKLDVDDGSGIPISVSYDLKLDVSTVFFTSYDVSLNVAIISFTSYDILLNVFNSIETDYDLRLDVSTVFFTSYDLKLDVSDNSGVPIFVSYDLSLNILFNVETNYDLRLNVLSNLGYSFDYNTVLDVVRNINTSYDIKLIIDYEISTSYDLRLNVLSIYGHSFDYNTVLDVIRNINTSYDVSLTVIDILNELITICDIEYSTSSFNVIDVRLLDSESFIEFFNSIIYVSYTPILVNTCELLFSISDIGVYFGVNNSENLFSTCDISFDLPIINSILNISLSLNSIIEFNLSEVALVRQLLILTDDVITFNTTNILLSILHELDTNSVIVINTNSITIYLERFNISNIKSYENVTVIRSYESLICRKGE
Physico‐chemical
properties
protein length:760 AA
molecular weight: 84422,29640 Da
isoelectric point:4,20253
aromaticity:0,11053
hydropathy:0,10684

Domains

Domains [InterPro]
IPR013320
STR
168–331
IPR013320
IPR013320
STR
168–340
IPR013320
G3DSA:2.60.120.200
STR
170–374
G3DSA:2.60.120.200
PF13385
LEC
177–328
PF13385
IPR006558
LEC
189–327
IPR006558
WBK39766.1
1 760
Architecture
STR
STR 168-374 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBK39766.1
1 760
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,8648
Central domain 118 320 204 0,3649
C-terminal 321 760 439 0,0158
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-320
C-terminal
321-760

Taxonomy

  Name Taxonomy ID Lineage
Phage Desulfofustis phage LS06-2018-MD01
[NCBI] 		3003834 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBK39766.1 [NCBI]
Genbank nucleotide accession
OP947158 [NCBI]
CDS location
range 31110 -> 33392
strand -
CDS
ATGGGTCTATTAGCAGACGGCTGGACTAAGCGCCAGACGATTTCTATACAGCCGACTACGGCGGCACTAGCAGAATTTACCGCTGTACTTACCGAGGCAATGTTGCCATCGGTAGTTACTGATGTTTTGTTTGATGCCATTGACGGTGCGCTAACCACTGGCGGTGATTTGCGTATTTCTGTTGATAAGGATGGTGATACTTTAGTTGGCCTTGATTTTCGTCGTTGGGATAAGGCTGCTGGCAAAATAGAGATTGCCTATCGAGTACCGACTACATCAGCATTATTGATAACTACTCTGTATTTGTGGTGGGGTAAAGAGGGAGCTGAACAACCCGCAGCTAATGAGCTCGGCGGTCAGCATTCAGCCTATGATGATGACACGATTTTCTGTGCTCCTGTTGGGAGCGGCGTAAACCGCACAGCGTTCAACATTACTGGGACAGATGTCGGGGACATTACTGCCGGGGACATTGCAGCTCCGAGCGGTCTTCTTGGGACTCAACATACGGACGTCGGAGATTACTCGACATATGGGGATAATCCAGACCTTGACCTAGTCAACACGGACTGGACAATGTCTTTTCTGTTTCGTGCGACCACTTCAGGTTTGGAACAGTATGTCCTAGGAAAATACGATCATACCACGCAAAACCGTGGTTATCTCTGTATATTCTCAGGGAGCCAGCACTTCGATTTGACTTATCAGCCCGTGCGAACTTCCTATAACCCAATTTATCGTCTTTCTAGTGGAGTGGATGTAGTCGATGGACAGTGGCACCACTTGGCTGGGACGTTCATATCCGGAACTAGGGCCTCGGTTTATGTGGATGGCATTCTTCGCAATACAACAACTAATAATATCCCGTCTAGCATTGCAAGTAACAATGCGTCCTTTCAGATCGGAACGCAGGTTACTGCACAAAACCGACCAGCAGACTTTTCGCACGTCACGGTGCATAGCGTTGCCCGCTCGGCTGAATGGCTCAAGGCCGAAAACGATAACTTTCGTGATCCCAACAGCTTTTACGACGCTTTCCCAGCGCCTGACTATGTTAGCGAGATAACTACTTCATATGATTTAAGATTAAATGTATCTGTAGATACTAGTATAGCATATTCTTTTGATTATACTACAGAACTAATTGTTGAACGAGCTGTAACTATTCTGTATGATTTAAAATTAGACGTAGATGATGGTTCTGGTATACCTATTTCTGTTTCTTATGATTTAAAATTAGACGTATCTACAGTATTTTTTACTTCTTATGATGTTAGCTTAAATGTAGCTATAATATCTTTTACTTCTTATGATATTTTATTAAATGTATTTAATTCAATAGAGACTGATTATGATTTAAGATTAGACGTATCTACAGTATTTTTTACTTCTTATGATTTAAAACTAGACGTATCTGATAATTCTGGTGTACCTATTTTTGTTTCTTATGATTTAAGTTTAAACATACTTTTTAATGTAGAAACTAATTATGATTTAAGATTAAATGTCTTATCTAATCTTGGTTATTCTTTTGACTATAATACAGTATTAGACGTAGTACGAAATATTAATACTTCGTATGATATTAAGTTAATTATAGACTATGAAATATCTACTTCTTATGATTTAAGATTAAATGTTCTCTCTATTTATGGACATTCTTTTGACTATAATACAGTATTAGACGTAATACGAAATATTAATACTTCATATGATGTTTCTCTTACTGTAATTGATATTCTTAATGAATTAATTACTATTTGTGATATTGAATATTCTACTTCTAGTTTTAATGTAATCGATGTTAGATTATTAGATAGTGAAAGTTTTATTGAGTTTTTTAATTCTATAATATATGTTTCTTATACGCCGATATTAGTTAATACTTGTGAATTATTATTTTCAATTTCAGATATAGGCGTATATTTTGGTGTAAATAATTCTGAAAATTTATTTAGTACCTGTGATATATCATTTGATTTGCCTATAATTAATAGTATTCTTAATATATCACTATCACTTAATTCTATTATAGAATTTAATTTATCTGAAGTAGCTTTAGTAAGACAGTTACTTATTTTAACTGATGATGTTATTACTTTTAACACTACTAATATCCTACTATCAATATTACATGAGTTAGATACAAATAGTGTTATAGTAATTAACACTAATTCTATCACAATTTATCTTGAAAGATTTAATATTAGTAATATTAAATCATATGAAAATGTAACTGTAATAAGAAGCTATGAATCATTAATATGTAGAAAAGGAGAATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
0cbbed842173551253b1607301ee4409a1c2057b12c3669e4c2b80cd6cea83d1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5137
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank