Protein

View in Explore
Genbank accession
XGX96899.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDSGTASLAANGTVTGTGTNWMAPLTLIRVGATIVFKTEPVKIYTISEIISDTQINVYNPNSETVPAGTGYAILAHDGITVQGLAQDVAETLRFYQSRESEVATAVDVFKDFNQDKFASDVNQVNTQYGEIVNIGAQVSNDANQVASDKDAAAASAQEAAGYADSINPGLFLAKSQNLADLKDKKKARDNLMVPYLSSSPIPSGVNIDSISGVKNTGIYYQNNTDNATVANGYPEKTAGTLFVYSAIANGVNHTTQDYIPSNKQGITYRRQYNLDSGTWKWSSWQRFLSVESFKTIQPEFGSVISATRNVKSFSLEVHEPNRNATIMAWGNNNGRPSVVECKLDNGFLWYAQQNADGGRYFEVNGPINATAFNQTSDREKKDNIEVISDATVKLRMMNGYTYTLKSNGMPYAGVIAQEVQDAIPEAFSGTFEYIDAHGVNPDGTPLQLENRSYMVDYSGITGLLVQVGRETDDRVTKLEREVEELKAIVSTLISK
Physico‐chemical
properties
protein length:498 AA
molecular weight: 54304,62830 Da
isoelectric point:4,86300
aromaticity:0,09036
hydropathy:-0,35863

Domains

Domains [InterPro]
DC_0022
STR
1–498
DC_0022
cd19958
STR
204–290
cd19958 IPR030392
IPR030392
CHP
379–429
IPR030392 Coil
XGX96899.1
1 498
Architecture
STR
STR 1-498
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Rao1
[NCBI] 		3243745 Viruses >
Host Escherichia coli str. K-12 substr. MG1655
[NCBI] 		511145 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XGX96899.1 [NCBI]
Genbank nucleotide accession
PQ221054.1 [NCBI]
CDS location
range 29958 -> 31454
strand -
CDS
ATGGCAATTTATGATTCTGGCACAGCAAGCCTGGCAGCCAACGGTACCGTAACTGGTACTGGAACCAACTGGATGGCTCCGCTTACTCTCATTCGTGTAGGCGCCACTATTGTGTTCAAAACTGAACCAGTGAAGATTTACACTATCTCTGAAATTATCAGCGATACGCAGATTAATGTATACAACCCAAATTCTGAAACTGTTCCTGCTGGTACTGGTTACGCGATTCTAGCTCATGATGGGATTACCGTTCAGGGATTGGCACAGGATGTTGCGGAAACTCTGCGCTTCTACCAATCGAGAGAATCTGAGGTTGCAACAGCGGTTGATGTTTTTAAGGATTTTAATCAGGATAAATTTGCAAGTGATGTAAATCAAGTAAATACGCAATATGGTGAGATTGTTAATATTGGAGCGCAGGTATCAAATGATGCAAATCAGGTAGCTTCTGATAAAGACGCAGCAGCGGCATCAGCGCAAGAAGCGGCAGGTTACGCTGACAGCATTAACCCAGGTCTATTTCTGGCTAAAAGCCAGAACCTGGCAGATCTGAAGGATAAGAAAAAAGCAAGGGATAACCTTATGGTTCCTTATCTCTCCTCGTCTCCAATTCCGTCAGGCGTTAACATTGACTCGATTAGTGGAGTCAAAAATACTGGCATTTATTACCAAAACAACACAGATAATGCGACCGTTGCCAATGGATATCCTGAAAAAACTGCTGGCACTCTTTTTGTTTACAGCGCTATAGCGAATGGTGTCAATCATACTACGCAAGATTATATTCCTTCCAACAAACAAGGCATAACATACAGAAGACAGTACAACTTGGATTCTGGCACATGGAAATGGAGCTCGTGGCAAAGGTTTTTAAGCGTTGAGTCATTCAAAACAATACAGCCTGAGTTTGGTTCTGTTATTAGCGCCACGCGAAATGTAAAGTCATTCTCGTTAGAAGTGCATGAGCCTAATAGAAATGCCACCATCATGGCTTGGGGCAATAACAACGGAAGACCTTCTGTAGTTGAGTGCAAGCTAGATAATGGCTTTCTTTGGTACGCACAACAAAACGCTGATGGAGGAAGGTATTTCGAAGTGAATGGGCCTATTAATGCTACGGCATTTAACCAAACATCTGACAGAGAAAAGAAAGATAACATTGAAGTTATCTCTGACGCGACTGTAAAGTTACGCATGATGAACGGTTACACCTATACCTTGAAATCTAATGGAATGCCTTATGCTGGCGTAATCGCACAGGAGGTTCAAGATGCTATACCGGAAGCGTTTAGTGGTACTTTTGAATACATAGATGCTCACGGTGTAAACCCTGATGGAACTCCACTGCAACTGGAGAATAGGAGCTACATGGTTGACTATTCCGGCATTACTGGATTGCTTGTTCAGGTTGGGCGAGAGACGGATGATAGGGTGACTAAACTTGAAAGGGAAGTGGAGGAACTTAAAGCTATTGTGTCAACATTGATTAGCAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d07500cf040d83e92a1a9c89fa3fef060a7576138ab00bbfb8604489a6f51d45
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8006
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Base-modified nucleotides mediate bacterial immune signaling Liu,Y. 2024-12-20 — GenBank