Protein

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Genbank accession
AJE28084.1 [GenBank]
Protein name
pectin lyase fold containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDFKKWQDPLMNSELQQDYNDNLVKLAGSLEKANQDMTHVNQRISNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVYDLMDKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLNSNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGYLYIAGLEETNTAGTTKNYFIKATRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVNGCYFASQNVDVRGYNTARVEVQNIVHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLSGGGVVRT
Physico‐chemical
properties
protein length:341 AA
molecular weight: 37343,42300 Da
isoelectric point:4,83162
aromaticity:0,08211
hydropathy:-0,25132

Domains

Domains [InterPro]
DC_0125
ATT
1–237
DC_0125 DC_1668
Coil
Unmapped
30–50
Coil G3DSA:3.30.1910.20
IPR011050
STR
124–301
IPR011050
AJE28084.1
1 341
Architecture
ATT
STR
RBD
ATT 1-237 | STR 238-301 | RBD 302-341
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AJE28084.1
1 341
Domain Start End Length (AA) Confidence
N-terminal 1 159 159 0,8915
Central domain 160 330 172 0,9382
C-terminal 331 341 10 0,7563
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-159
Central
160-330
C-terminal
331-341

Taxonomy

  Name Taxonomy ID Lineage
Phage Listeria phage vB_LmoS_293
[NCBI] 		1591073 Uroviricota > Caudoviricetes > Aquingentivirus >
Host Listeria monocytogenes
[NCBI] 		1639 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AJE28084.1 [NCBI]
Genbank nucleotide accession
KP399678 [NCBI]
CDS location
range 16765 -> 17790
strand +
CDS
ATGGATTTTAAAAAATGGCAAGACCCACTAATGAACTCAGAACTACAGCAAGACTATAACGACAATTTAGTAAAACTAGCTGGAAGTCTTGAAAAAGCTAATCAAGATATGACGCATGTAAATCAACGTATATCTAACTTAGTTATTAAATCCGGCGGTAATGAATCGAATGAAGTAGTTGATGCGCGCGTTTCTTCTCTGGTTCCAGAAACTGAATTCACAACATTAAACGATAGAATAAATTACGCGGAAAATGCTTTAATAACAGGTGTCGGAAAGCTTTCAACGAATGTTTATGATTTAATGGATAAGTACAACGATATAGATACTATTTTAAAACGTTTATACGGCTTAGATAGCAGCAACATTGAAATATTTGTTGATGATGCTAGAGGCGATGATATTGCAGGAACTGGTGAAATTGATGCACCTTTTAAAACGATAAATAAAGCGGTAATGACTTTGCCTCGTGTGCTAAATAGTAACTCTGTGAATATCTGGATTGTTCCTGGTCGGTATAATGAAGATGTCGTTATTCCGCCAATCATGGGAGGGGACATCTACATTAGGTCTACAAACTTTGAAACAGTAGACCCTACCAGCAGTACCGGATGCCAAGTTCGAAGTATTTCTGCGACAGGAAGTAACGGCTATTTATATATTGCTGGTTTAGAAGAAACGAATACCGCAGGCACAACGAAAAACTACTTCATTAAAGCGACGCGATGCGGATTTGTAAGGATTACAAAATGCCGAATGGCCTTCAATACTAAGGCAATAGACCCGTTCACTGCGGTTTTTATTGATGCTTGTTCTGCTGATGTCAACGGCTGTTATTTTGCCTCACAAAATGTTGATGTTCGCGGTTATAACACTGCTAGAGTCGAGGTTCAGAATATCGTCCATGGCGCAAAAAGTGCGATTGGTTTGTATCCTCAAAGCGCCGATATTTTCAATCTCAATAGCGGGACTTGGGAAGCTGATACGCCTACGAAACTGAGCGGCGGGGGAGTTGTTAGAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a5af10f517af7c88d9f6755fb46cdab048d019ed3a653d0be6b109ef69ae9d9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8531
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50