Protein

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Genbank accession
UUJ74860.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSLTKPRCFRKASYLSQLGTLQNLANTGDDVLVIDVDYEFTNGETIDFKGRLVRIECEARFIGDGALIFTNMASGSVVEKPFMESKSTPLVIYPWTEDGKWITDAQAVAATLKRSKTEGYQPGVNDWVKFPGLEALMPQEVKDQYVVSTLDIRDCVGVEVRRAGGLMAAYLFRNCHHCKVIDSDTIIGGKDGIITFENLGGEWGIGNYAIGGRVHYGSGSGVQFLRNNGGASHNGGVIGVTSWRAGESGFKTWQGSVGAGTSRNYNLQFRDSVALSPVWDGFDLGSDPGMAPEEDRPGDLPVSQYPMHQLPNNHMVDNILVMNSLGVGLGMDGRGGYVSNVTVQDCAGAGILAYAFNRTFSNITVIDCNYMNFDSDQIIIIGDCIVNGIRAAGIKPQLSKGMIISAPNSTLSGIVGNVPPDRILAGNILDPVLGHTRINGFNSDSAELSFRIHKLTKTLDSGAIRSTLNGGPGTGSAWTEMTAISGSAPNAVSLKINRGDFKATEIPVAPTVLPDEAVRDHNSIALYFDQEALWALVKKPNGSLTRMKLA
Physico‐chemical
properties
protein length:550 AA
molecular weight: 59067,20910 Da
isoelectric point:5,56843
aromaticity:0,07818
hydropathy:-0,11491

Domains

Domains [InterPro]
IPR011050
STR
1–550
IPR011050
IPR012332
STR
2–550
IPR012332
IPR015331
RBD
3–550
IPR015331
UUJ74860.1
1 550
Architecture
STR
STR 1-550
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UUJ74860.1
1 550
Domain Start End Length (AA) Confidence
N-terminal 1 28 28 0,8737
Central domain 29 442 415 0,9879
C-terminal 443 550 107 0,9218
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-28
Central
29-442
C-terminal
443-550

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage GRNsp03
[NCBI] 		2969991 No lineage information
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UUJ74860.1 [NCBI]
Genbank nucleotide accession
OP038547.1 [NCBI]
CDS location
range 27678 -> 29330
strand -
CDS
ATGTCATTAACTAAACCGCGTTGCTTCAGGAAGGCAAGTTATCTTAGCCAATTAGGTACTTTGCAGAATCTGGCTAACACCGGAGATGATGTGCTTGTTATCGATGTTGACTACGAGTTCACTAATGGTGAGACCATTGACTTCAAAGGTAGGTTGGTTCGTATAGAGTGTGAAGCTAGGTTTATTGGTGATGGTGCTTTGATCTTCACTAATATGGCTAGCGGTTCTGTAGTAGAAAAGCCTTTCATGGAGAGTAAGTCTACCCCTTTGGTTATCTACCCTTGGACAGAAGATGGCAAGTGGATTACAGATGCACAAGCTGTTGCTGCTACATTGAAACGATCTAAGACAGAAGGGTATCAACCAGGAGTCAACGATTGGGTTAAATTCCCCGGACTTGAAGCATTGATGCCTCAAGAGGTGAAAGATCAGTATGTAGTATCCACACTGGACATCCGTGACTGCGTAGGTGTTGAGGTAAGACGCGCTGGCGGCCTTATGGCAGCTTACTTGTTCCGCAACTGTCATCATTGTAAGGTAATTGATTCTGACACCATCATTGGTGGTAAAGACGGAATCATAACCTTTGAAAACTTAGGTGGTGAATGGGGTATCGGCAACTATGCCATAGGTGGTCGTGTACATTATGGCTCAGGTAGTGGTGTGCAGTTCCTTCGAAACAATGGAGGTGCATCACACAATGGTGGCGTTATTGGTGTAACCTCATGGCGTGCAGGTGAATCTGGGTTCAAGACATGGCAAGGTTCTGTCGGTGCAGGTACGTCTCGTAACTATAACCTTCAGTTCCGTGATTCCGTTGCACTGTCTCCAGTGTGGGATGGCTTTGACTTAGGTTCAGACCCAGGAATGGCACCAGAAGAAGATAGACCAGGAGACTTACCTGTGTCTCAATACCCCATGCATCAGTTACCTAATAACCACATGGTTGATAACATCCTTGTTATGAACTCATTAGGTGTAGGTTTAGGTATGGATGGTAGAGGTGGTTATGTGTCGAATGTTACCGTGCAGGATTGTGCAGGAGCAGGTATACTTGCTTATGCATTCAACCGGACCTTCTCTAACATTACGGTGATTGACTGCAACTACATGAACTTCGATTCAGACCAGATAATCATCATTGGTGACTGCATCGTGAATGGCATCCGAGCAGCGGGTATTAAGCCTCAGCTATCCAAAGGCATGATCATCAGTGCACCTAACTCAACCTTGAGCGGTATTGTGGGTAATGTGCCGCCAGACCGTATTCTTGCAGGTAACATCCTTGACCCTGTGTTGGGTCATACAAGGATTAATGGGTTTAATAGTGACTCGGCGGAACTGAGCTTCAGAATCCACAAGCTTACCAAGACCTTGGATAGTGGTGCTATTCGCTCTACGCTGAACGGTGGGCCGGGTACTGGTTCTGCATGGACTGAGATGACTGCAATTTCAGGGTCAGCTCCAAATGCTGTCTCGTTGAAGATTAACCGTGGAGACTTCAAGGCAACTGAGATACCAGTAGCACCTACTGTGCTTCCAGATGAAGCGGTAAGAGACCACAACTCTATCGCACTTTATTTTGATCAGGAAGCTCTTTGGGCTTTAGTTAAGAAGCCAAACGGAAGCCTCACACGAATGAAGCTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
83771714e7dbadb5556c456ff86d6457d4c1de1d251983fccecd25ed0ab9555b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6675
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three novel Salmonella bacteriophage and their application in different food matrices Li,Y., Lv,P., Shi,D., Zhao,H., Yuan,X., Jin,X. and Wang,X. 2018-09 — GenBank