Protein

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UniProt accession
A0A1S5R3Z4 [UniProt]
Protein name
Probable pectate lyase C
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSITRTNTLADVNGNNSINVSELASKVVMSAPEGASKIGYGNRTQEQKNGDVLSVRDYITTAVNGVTSNQAGIVAAVAAAKSSGASLHWPAGTYVSTASIPDFHSVRHTGPGVVKRGTNLFSISQFDSAMNTLFVSTSGLTTNDGLSSTEAMLSPNAAVNLWGAKYAATACGPWKIKIAAGTYFESIIAQGYQSNKEIFLEGEYDAVNQVPLTIMDGSVGATNSGIIFTTYGWVNCKWILCQNFTTVGAGGFNIGNYGRMTIDTCHAYNNNLVGFSAAQAADLRIIGRCYIKPSANGTGVTYYRQCTGSWSDATGEIIIDGFNNAATTGVLVRDNSYVVAGCKLTVRNCTSQAVWLRRHSYLEVRDYEITNNNIAFDLRDLSLLAPNGGTQVLTGNTQDYAYKNFSLPWDTASNMAIGADGPSVQAPSAGNYALVVSGKSQVGQQFLTDASTSTINIDFNKKGSLVYAQTDNTLRIALNSADAYRFAASVFYPTVDNAKTLGGSSFRWSTIYAGTSTINTSDETAKQQIKPIDDACLRAWANVEYVQYKFNDAVEAKGDGARWHFGLIAQRVKKAFEDEGLNAFDYGLLCYDEWDEQPEEVDEEGNIIQAYLAAGSRYGIRYEEALALECAYLRSLLKK
Physico‐chemical
properties
protein length:639 AA
molecular weight: 68852,91380 Da
isoelectric point:5,28883
aromaticity:0,10172
hydropathy:-0,17199

Domains

Domains [InterPro]
DC_1853
STR
1–551
DC_1853
IPR018247
Unmapped
11–23
IPR018247 IPR011050 IPR012334 IPR030392
SSF69349
STR
467–520
SSF69349 cd10144
IPR024430
ENZ
469–520
IPR024430 IPR030392
IPR036388
RBD
522–639
IPR036388
A0A1S5R3Z4
1 639
Architecture
STR
RBD
STR 1-551 | RBD 552-639
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A1S5R3Z4
1 639
Domain Start End Length (AA) Confidence
N-terminal 1 66 66 0,9675
Central domain 67 425 360 0,9557
C-terminal 426 639 213 0,9347
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-66
Central
67-425
C-terminal
426-639

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage pf16
[NCBI] 		1815630 Uroviricota > Caudoviricetes > Chakrabartyvirus >
Host Pseudomonas putida
[NCBI] 		303 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0098015 virus tail Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
de5625d6b54a08f2d4b46553735502e8054b5385711a911ec4436011c7df7400
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7848
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50