Protein

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Genbank accession
BAD20635.1 [GenBank]
Protein name
gp12 Short tail fibers
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MSNNTYQHVSNESKYVKFDPVGSNFPDTVTTVQSALSKISNIGVNGIPDASMEVKGIAMIASEQEVLDGTNNSKIVTPATLATRLLYPNATETKYGLTRYSTNEETLEGSDNNSSITPQKLKYHTDDVFQNRYSSESSNGVIKISSTPAALAGVDDTTAMTPLKTQKLAIKLISQIAPSEDTASESVRGVVQLSTVAQTRQGTLREGYAISPYTFMNSVATQEYKGVIRLGTQSEINSNLGDVAVTGETLNGRGATGSMRGVVKLTTQAGIAPEGDSSGALAWNADVINTRGGQTINGSLNLDHLTANGIWSRGGMWKNGDQPVATERYASERVPVGTIMMFAGDSAPPGWIMCHGGTVSGDQYPDYRNTVGTRFGGDWNNPGIPDMRGLFVRGAGTGXHILNQRGQDGYGKDRLGVGCDGMHVGGVQAQQISYHKHAGAWGENGNNRGYAPFGASNGSGYLGNGRSADWDNHLFFTNDGFEMGGPRDSFGTLNREGLIGYETRPWNISLNYIIKIHY
Physico‐chemical
properties
protein length:518 AA
molecular weight: 55312,55550 Da
isoelectric point:5,84318
aromaticity:0,07737
hydropathy:-0,46422

Domains

Domains [InterPro]
DC_0176
STR
1–437
DC_0176
IPR015173
STR
246–324
IPR015173 IPR037053 IPR044916
SSF69349
STR
246–346
SSF69349 IPR027448
G3DSA:2.10.280.10
Unmapped
246–286
G3DSA:2.10.280.10 SSF88874
IPR011083
ATT
337–392
IPR011083
BAD20635.1
1 518
Architecture
STR
ATT
STR
STR 1-323 | ATT 324-392 | STR 393-516 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Enterobacteria phage PP01
[NCBI] 		156995 Uroviricota > Caudoviricetes >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BAD20635.1 [NCBI]
Genbank nucleotide accession
AB180231.1 [NCBI]
CDS location
range 1 -> 1557
strand +
CDS
ATGAGTAATAATACATATCAGCACGTATCAAATGAATCAAAATATGTTAAATTCGATCCAGTGGGATCGAATTTTCCTGACACTGTTACGACGGTGCAGTCTGCATTATCAAAAATAAGTAATATCGGCGTAAATGGTATTCCTGATGCATCTATGGAAGTTAAAGGAATAGCAATGATTGCATCAGAGCAAGAGGTTTTAGATGGAACAAATAATTCTAAAATCGTTACACCAGCTACATTAGCAACAAGATTATTGTATCCAAATGCTACTGAAACTAAATATGGTTTAACGCGTTATTCAACAAATGAAGAAACATTAGAAGGCTCAGATAATAATTCATCAATAACACCGCAAAAACTGAAATACCATACTGATGATGTGTTCCAAAATAGATATTCGTCTGAGTCGTCAAACGGGGTTATTAAAATATCATCTACACCTGCAGCTTTGGCTGGAGTTGATGATACTACGGCAATGACTCCATTAAAAACCCAAAAACTTGCAATAAAATTAATTTCACAAATAGCTCCTTCCGAAGATACTGCATCAGAATCTGTGAGAGGTGTAGTTCAATTATCTACTGTTGCGCAAACTCGTCAAGGAACTCTCCGCGAAGGATATGCAATTTCTCCGTATACCTTTATGAATTCTGTTGCAACACAAGAATATAAGGGTGTTATACGTTTAGGAACACAATCGGAAATTAACAGTAATTTAGGAGATGTTGCAGTAACAGGTGAAACACTAAATGGTCGAGGAGCTACTGGTTCTATGCGTGGAGTCGTCAAATTAACGACGCAGGCCGGTATTGCCCCCGAAGGTGATAGCTCTGGAGCATTAGCATGGAACGCAGATGTAATTAATACTCGCGGTGGACAAACTATTAATGGTTCTTTAAATTTAGATCATCTTACAGCAAACGGAATCTGGTCGCGCGGCGGAATGTGGAAAAATGGCGATCAACCTGTTGCCACTGAAAGATATGCGTCAGAAAGGGTTCCAGTTGGAACTATTATGATGTTTGCGGGAGATTCAGCACCTCCGGGTTGGATTATGTGCCACGGTGGAACAGTGTCAGGAGATCAATATCCTGATTATAGAAACACAGTTGGAACAAGATTTGGTGGTGATTGGAATAATCCAGGGATTCCTGATATGCGAGGTCTTTTCGTCAGAGGAGCGGGCACCGGCGSTCATATTTTAAATCAACGAGGACAAGATGGTTATGGGAAGGATAGACTTGGTGTAGGATGTGATGGAATGCATGTTGGCGGTGTTCAAGCACAACAAATATCATACCATAAACATGCTGGTGCCTGGGGTGAAAATGGAAATAACAGAGGTTATGCACCGTTTGGCGCATCTAATGGCAGTGGATATTTAGGCAATGGTAGAAGCGCCGACTGGGACAACCATTTGTTCTTTACTAATGACGGATTTGAAATGGGTGGTCCTCGTGACTCGTTCGGCACGTTAAATCGCGAAGGATTAATTGGTTATGAAACTAGACCATGGAATATATCATTAAACTATATTATTAAAATTCATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
30d1fd458721afe92635ae10fd2a6458c31b97f1057bd97e2d82bfabd8ed3fa5
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7638
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Alternation of tail fiber protein gp38 enables T2 phage infectious to Escherichia coli 0157:H7 Yoichi,M., Abe,M., Unno,H. and Tanji,Y. 2005-01 — GenBank