Protein

View in Explore
Genbank accession
AGG54456.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKKLLPIIMLLAAGSAANAGGLTHKLSSSVQLTVDAAATNVQRVGNSYTVSGNNVGTSYTGTGQGASAVTNGIGQLDISSGVSSLGTVQATQATAGESFSFSQVYTQGDTIVTSAPSVGAVSAYSNQTSTASGSAGDLAGTIDSSGTLAITAGGAGTSAVGQFVSEISILN
Physico‐chemical
properties
protein length:171 AA
molecular weight: 16514,93420 Da
isoelectric point:4,59000
aromaticity:0,04094
hydropathy:0,24678

Domains

Domains [InterPro]
IPR046285
STR
9–162
IPR046285
IPR046285
STR
20–162
IPR046285
AGG54456.1
1 171
Architecture
STR
STR 9-162 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54456.1
1 171
Domain Start End Length (AA) Confidence
N-terminal 1 164 164 0,4954
Central domain 165 164 1 0,0577
C-terminal 165 171 6 0,8930
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-164
Central
165-164
C-terminal
165-171

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6b
[NCBI] 		682651 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54456.1 [NCBI]
Genbank nucleotide accession
HQ316603 [NCBI]
CDS location
range 148171 -> 148686
strand +
CDS
ATGAAAAAATTACTACCTATTATTATGCTTTTGGCTGCTGGATCTGCTGCTAACGCTGGTGGATTGACGCACAAATTGAGTAGCAGTGTCCAATTAACCGTAGACGCTGCAGCAACTAACGTACAACGTGTAGGTAACTCTTACACTGTATCGGGAAACAACGTCGGCACTAGCTATACTGGCACTGGTCAAGGTGCAAGTGCAGTTACTAATGGCATTGGTCAACTAGATATCAGTTCAGGAGTGAGTTCTTTAGGTACGGTACAAGCAACTCAGGCCACCGCTGGAGAAAGTTTCAGCTTTAGCCAAGTTTACACACAAGGAGATACAATTGTGACATCAGCACCTAGTGTTGGTGCAGTAAGTGCATACAGCAATCAAACTTCAACTGCCTCAGGCAGTGCGGGCGATTTAGCTGGAACTATTGACAGTTCTGGAACTCTCGCAATTACTGCAGGTGGTGCTGGTACTAGTGCTGTTGGTCAATTTGTATCTGAAATTTCCATCCTAAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ab87e4f6b10a8dd514cb8eba3cfd2c00b9b1cf722184ff10a5f100068f12384e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3439
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6b Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank