Protein

View in Explore

Genbank accession

CAB4135180.1 [GenBank]

Protein name

Collagen triple helix repeat

RBP type

Evidence RBPdetect

Probability 0,65

Evidence RBPdetect2

Probability 0,95

Protein sequence

MTAPIMIDSVELKPSSRESSDQHGSCTDGCFGSPPQPGPTGYQGSQGYQGIQGLQGTNPGVQGSQGTQGLQGYQGEQGAQGIQGLQGTNPGVQGPQGTQGSDGYIGLDGPQGIQGLQGTNPGVQGAQGAQGAQGANGYIGLDGPQGWQGLQGTNPGVQGPQGIAGIQGNQGSVGDTGTQGNQGNQGNQGLQGNQGLQGRQGSQGLQGNQGNQGLQGLQGNQGTQGNQGQQGNQGGQGSTGTQGSQGTIGLVGTQGSQGNQGNIGAIGTQGNQGNQGIQGTQGNAGVVGSQGNVGSAGTQGNVGSTGSQGNQGTQGNQGNQGTQGNQGLQGRQGNQGNQGLQGNQGVQGSQGLQGNQGQQGNQGIQGNQGNQGNQGNQGQQGNQGLQGVQGNQGNQGRQGAQGIQGLQGTNPGVQGPQGLAGYVGTDGAQGAQGIQGVQGLQGTNPGVQGFQGSAGYIGSDGAQGRQGLQGGQGLQGNQGNQGTQGNVGSAGIQGNQGLQGNQGAQGNQGAIGTGAQGNQGNQGVQGSQGNQGSAGGAGTQGNQGLQGNQGNQGNTGTQGNQGNQGVQGTQGNQGRQGNQGNQGTAGSTGVQGNQGAQGNQGSAGSIGTQGLQGWQGAQGNQGNVGSSGAQGNQGVQGNQGNQGTVGTQGNQGSSGTVGSQGNVGSIGTQGSVGTQGNQGNQGLQGLAGTSGGAGSQGNQGNQGSVGVQGLQGLQGNQGSQGSGIQGSQGVQGNQGLQGTNPGVQGSQGTQGAQGIGYIGSDGPQGWQGLQGTNPGVQGPQGNQGNQGAGAALVNSQSGTTYTLQTSDANNVVAFTNGSSITCTVPTNAAAAIPIGSIIVIEQRGAGVVTLSPFDGTVTINGQLTTAAQWKSVTLIKQDVNTWDSIGSVGPTGAQGYQGTGAQGNQGQQGNQGLQGNQGPISAQGSQGSQGNAGIQGFQGNQGLVGIQGNQGSQGLQGLTGTQGNQGFQGNQGRQGNQGLQGNQGNQGNQGLQGNQGLQGNQGNQGNQGNQGWQGLAGVQGNQGVQGNQGSQGNQGLQGNVGLQGNQGNQGLQGPQGNQGAQGNQGQQGNQGNQGVQGLQGLQGNQGQQGNQGLQGNQGVQGNQGRQGFQGFQGTTAGLQPLHGFVDQASSSLTMSGSTFQLAPTSGSFDLWIEGVKYTYSTTQTVSIATDNTLHYVYFDSAGVLQVAISPWSILSSNSPVATVYRNGSIYLIGDERHHYDRNREWHAWAHATLHAQYASGGTGAFTDTTLSIDQGVIRDEDIIIDSGGTKTTCLLMYRDPTLAYMVVGNLTSSTVYKATASKLQWDNGGALADVSNGNYGVHFVYQTNDVNNPIYSVLGQAQYTSSALAQAAAVPTTFPAYLTREWKLLYIVVYKQQGANTITFDSQVDLRSSVSGVGATGATGFQGNQGIQGSQGLQGNQGNQGLIGVQGFQGNQGQQGNQGNQGNQGQQGNQGTQGNVGLQGQQGNQGVQGNQGQQGNQGNQGNQGNQGSQGNQGLQGWQGLQGLQGLQGNQGRQGNQGSQGNQGQQGLQGLVGTQGQQGNQGLQGNQGAQGIQGSGAQGSQGYQGSGIQGFQGVSANGAQGLQGLQGLQGTGTNGVQGVQGLQGTNPGVQGNQGLQGNQGAGAASIDPQSGTTYTLALVDANNIVAFTNSGAIVCTVPTNAVAAFSVGTIIVIEQRGTGTVTLSPFDGSVTINGQLTTAAQWKSVTLIKQGTNTWDSVGSVGPTGPQGMQGFQGTGTNGVQGVQGPQGCQGLQGAGTNGAQGIQGLQGTNPGVQGPQGCQGLQGTGTAGVQGIQGLQGTNPGVQGPQGIQGLQGTGTNGVQGVQGLQGTNPGVQGYQGIQGSGAATVNTQSGSPYTLVLTDANNIVYFTSNSAVSCVVPANGTVAIPVGSITLLEQAGTGTVTVSPFDGTVTVNGQLTTVGQYTALSLVKTATNVWDSLRSVGPTGLQGLQGLQGNQGRQGNQGSQGNQGNQGNQGLQGNQGRQGNQGSQGNQGQQGLQGLQGQQGLQGLQGNQGRQGNQGQQGNQGNQGQQGNQGNQGPTTSPEAGSTYAPSSGSQTVALDCAGHNIHIVTGNASGTAITFTVTGATNNQAFIVSILQGSTVSTIAGWFATVRWAGGVTPTLTAVANKRDTFGFIRTGTNTYDGFIVGQNC

Physico‐chemical properties

protein length:	2155 AA
molecular weight:	213061,34460 Da
isoelectric point:	5,19687
aromaticity:	0,03944
hydropathy:	-0,69202

Domains

Domains [InterPro]

DC_0656
STR
7–105

DC_0656 DC_0656 IPR050149 DC_1266 DC_0620 IPR008160 DC_1166 DC_1864

DC_1391
STR
85–156

DC_1391 DC_2298 DC_0656 DC_0620 DC_1453 DC_1031 DC_1341 DC_0620 DC_1166 IPR008160

DC_0656
STR
344–412

DC_0656 IPR008160 IPR008160 DC_1453

IPR008160
STR
348–405

IPR008160

CAB4135180.1

1 2155

Architecture

STR

STR 7-250 | STR 287-412 | STR 436-627 | STR 692-1014 | STR 1043-1521 | STR 1536-2155

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0656	STR	DC_0656	7	105	Novel HMM	DC_0656	Central	Low	Positional only	102 proteins / 102 hits
DC_1391	STR	DC_1391	85	156	Novel HMM	DC_1391	Central	Low	Positional only	28 proteins / 28 hits
DC_0656	STR	DC_0656	136	205	Novel HMM	DC_0656	Central	Low	Positional only	102 proteins / 102 hits
DC_2298	STR	DC_2298	188	250	Novel HMM	DC_2298	Central	Low	Positional only	339 proteins / 339 hits
IPR050149	Unmapped	-	256	786	InterPro	Collagen superfamily	-	-	-	-
DC_0656	STR	DC_0656	287	361	Novel HMM	DC_0656	Central	Low	Positional only	102 proteins / 102 hits
DC_0656	STR	DC_0656	344	412	Novel HMM	DC_0656	Central	Low	Positional only	102 proteins / 102 hits
IPR008160	STR	DC_0536	348	405	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_0620	STR	DC_0620	436	535	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
IPR008160	STR	DC_0536	458	513	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR008160	STR	DC_0536	514	569	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1453	STR	DC_1453	556	627	Novel HMM	DC_1453	Central	Low	Positional only	102 proteins / 102 hits
DC_1031	STR	DC_1031	692	894	Novel HMM	DC_1031	Central	Low	Positional only	21 proteins / 21 hits
DC_1266	STR	DC_1266	881	944	Novel HMM	DC_1266	Central	Low	Positional only	66 proteins / 66 hits
DC_1341	STR	DC_1341	932	1014	Novel HMM	DC_1341	Central	Low	Positional only	76 proteins / 76 hits
DC_0620	STR	DC_0620	1043	1388	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
DC_0620	STR	DC_0620	1375	1464	Novel HMM	DC_0620	Central	Low	Positional only	205 proteins / 205 hits
IPR008160	STR	DC_0536	1398	1456	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
DC_1453	STR	DC_1453	1451	1521	Novel HMM	DC_1453	Central	Low	Positional only	102 proteins / 102 hits
DC_1166	STR	DC_1166	1536	1741	Novel HMM	DC_1166	Central	Low	Positional only	45 proteins / 45 hits
DC_1166	STR	DC_1166	1725	1946	Novel HMM	DC_1166	Central	Low	Positional only	45 proteins / 45 hits
DC_1864	STR	DC_1864	1913	2155	Novel HMM	DC_1864	Central	Low	Positional only	67 proteins / 67 hits
IPR008160	STR	DC_0536	1946	2003	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	uncultured Caudovirales phage [NCBI]	2100421	Uroviricota > Caudoviricetes > Peduoviridae > Maltschvirus maltsch >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

CAB4135180.1 [NCBI]

Genbank nucleotide accession

LR796294 [NCBI]

CDS location

range 119637 -> 126104
strand -

CDS

ATGACCGCCCCGATAATGATAGATTCTGTTGAATTAAAACCCTCCTCAAGGGAGTCGTCAGATCAACACGGATCTTGTACCGATGGGTGCTTTGGTTCACCACCGCAACCGGGGCCTACAGGCTATCAGGGGAGTCAGGGCTATCAGGGCATTCAAGGACTTCAAGGCACGAACCCTGGTGTACAAGGCAGTCAGGGTACGCAGGGCCTGCAGGGCTATCAAGGCGAGCAGGGTGCCCAAGGTATTCAAGGCCTTCAAGGAACAAATCCTGGTGTTCAAGGGCCACAAGGAACACAGGGTAGCGACGGCTATATAGGCCTAGATGGCCCTCAGGGAATCCAAGGGTTACAAGGAACCAACCCTGGTGTGCAGGGCGCTCAAGGCGCTCAGGGAGCCCAGGGAGCCAACGGGTATATAGGTTTAGACGGTCCTCAAGGATGGCAGGGCCTACAAGGGACCAACCCCGGCGTACAAGGGCCACAGGGCATTGCTGGCATACAAGGAAATCAGGGAAGTGTTGGGGATACTGGTACACAAGGTAATCAGGGGAATCAAGGCAACCAAGGGCTACAGGGAAACCAGGGGCTACAAGGACGTCAGGGTAGCCAAGGATTGCAGGGCAATCAAGGTAATCAAGGCTTACAGGGACTACAGGGAAATCAAGGAACACAAGGGAACCAGGGCCAACAAGGGAATCAGGGAGGACAAGGCTCCACCGGTACCCAAGGCTCACAAGGAACCATTGGGTTGGTTGGTACTCAAGGGAGCCAAGGCAATCAAGGCAACATTGGCGCAATAGGTACACAGGGTAACCAAGGGAATCAAGGCATACAAGGAACGCAGGGCAATGCTGGTGTTGTCGGTTCTCAAGGCAATGTTGGTTCTGCGGGAACGCAAGGTAACGTCGGCTCTACTGGTAGCCAGGGTAACCAGGGCACTCAAGGGAACCAGGGTAACCAAGGCACGCAAGGCAATCAAGGTCTCCAAGGTCGGCAAGGTAATCAGGGTAACCAAGGCCTGCAAGGTAACCAGGGAGTCCAAGGAAGTCAGGGGCTGCAGGGTAACCAAGGGCAACAGGGCAATCAAGGCATACAAGGTAACCAAGGAAATCAAGGAAACCAGGGGAACCAGGGACAGCAAGGTAATCAAGGCCTTCAAGGAGTACAGGGAAACCAGGGTAACCAAGGTAGGCAGGGCGCGCAAGGCATTCAAGGACTTCAAGGTACTAATCCTGGCGTACAAGGCCCTCAAGGACTAGCAGGGTATGTAGGTACTGATGGAGCTCAAGGTGCTCAAGGCATACAGGGTGTTCAGGGTCTTCAAGGAACTAATCCCGGTGTACAAGGTTTTCAGGGCTCTGCTGGTTATATAGGGAGTGATGGTGCGCAAGGCAGACAGGGTCTTCAAGGCGGCCAAGGTCTTCAGGGGAACCAGGGTAATCAAGGAACGCAGGGCAATGTCGGGTCAGCCGGAATTCAAGGTAACCAGGGGCTTCAAGGAAATCAAGGCGCACAAGGTAATCAAGGAGCCATAGGAACCGGCGCTCAAGGAAACCAAGGCAATCAGGGAGTACAAGGGAGCCAAGGCAATCAAGGTAGTGCGGGAGGGGCTGGGACTCAGGGTAATCAAGGCCTACAGGGTAACCAAGGCAACCAGGGCAATACCGGAACACAAGGGAATCAAGGAAACCAGGGTGTTCAAGGAACTCAGGGCAATCAAGGTCGGCAGGGTAACCAGGGGAATCAGGGCACCGCCGGGTCTACAGGAGTGCAAGGAAACCAGGGCGCACAAGGAAATCAAGGGAGTGCAGGTTCTATAGGGACTCAGGGACTTCAGGGCTGGCAGGGAGCACAAGGTAATCAGGGTAATGTTGGATCGTCGGGAGCTCAGGGTAATCAAGGAGTTCAAGGCAATCAGGGTAACCAAGGAACAGTAGGTACGCAGGGTAATCAAGGTAGTAGCGGTACAGTTGGCAGTCAAGGTAACGTTGGCTCAATAGGCACGCAAGGTAGTGTAGGAACACAAGGTAACCAGGGGAATCAAGGTCTGCAGGGACTAGCAGGAACTTCTGGTGGTGCAGGTTCTCAGGGAAATCAGGGTAACCAAGGCAGTGTCGGGGTTCAAGGATTACAAGGTCTTCAGGGGAACCAAGGATCTCAGGGCTCTGGTATACAAGGAAGCCAAGGAGTTCAAGGCAACCAGGGTCTGCAGGGCACTAATCCCGGTGTTCAGGGGTCTCAGGGAACACAGGGCGCCCAAGGTATTGGGTATATTGGGTCGGATGGTCCTCAAGGGTGGCAAGGTCTACAAGGAACAAATCCGGGGGTTCAAGGACCACAAGGCAACCAAGGAAACCAAGGAGCTGGCGCAGCGTTAGTTAATTCTCAGAGCGGAACTACTTACACGTTACAGACTTCTGATGCGAATAACGTCGTTGCTTTTACGAATGGCAGCTCTATTACTTGTACCGTTCCGACGAACGCAGCTGCAGCTATTCCGATAGGCAGTATCATAGTTATAGAGCAGAGGGGGGCTGGCGTAGTCACTCTCTCGCCTTTCGATGGAACTGTTACTATAAACGGCCAGTTAACTACTGCAGCTCAGTGGAAATCCGTAACCCTAATTAAGCAAGACGTTAATACGTGGGATTCGATTGGCTCTGTAGGCCCCACTGGAGCTCAAGGTTATCAAGGTACCGGAGCTCAGGGAAATCAAGGTCAACAAGGAAACCAGGGTCTCCAGGGTAATCAGGGGCCAATTAGTGCGCAGGGGTCTCAAGGCAGTCAAGGCAACGCCGGTATTCAAGGATTTCAAGGTAACCAGGGCCTGGTGGGTATACAAGGAAATCAGGGAAGTCAGGGATTACAAGGCTTAACCGGTACTCAAGGAAATCAAGGATTTCAGGGGAATCAAGGACGCCAGGGTAACCAGGGTCTGCAGGGCAACCAAGGTAACCAGGGAAATCAAGGTCTGCAAGGAAATCAGGGTCTGCAGGGGAATCAGGGCAATCAAGGAAATCAGGGTAATCAAGGATGGCAAGGTCTGGCCGGAGTTCAGGGGAACCAAGGGGTACAAGGAAATCAAGGTAGTCAGGGAAATCAAGGTCTGCAGGGTAATGTAGGACTGCAAGGGAACCAGGGAAATCAGGGGCTACAAGGACCACAGGGTAACCAGGGCGCACAAGGTAATCAAGGGCAACAGGGAAATCAAGGAAACCAGGGCGTACAAGGGCTACAGGGTCTTCAAGGAAATCAAGGGCAGCAAGGGAATCAGGGCCTTCAAGGCAACCAAGGGGTACAAGGAAATCAGGGAAGACAAGGATTTCAGGGTTTTCAAGGAACAACGGCGGGGCTACAGCCGCTCCATGGGTTCGTAGATCAAGCTAGTTCCTCTTTGACCATGTCTGGGTCAACATTCCAACTTGCTCCGACAAGTGGCTCGTTTGATTTGTGGATTGAGGGGGTAAAATACACATACTCGACTACTCAGACTGTCTCGATTGCTACGGACAACACCCTTCACTATGTGTATTTCGATAGTGCTGGAGTGCTACAGGTCGCGATATCACCTTGGAGTATTCTTTCTAGCAATTCTCCTGTCGCGACTGTTTATCGCAACGGTTCAATTTATCTGATAGGGGATGAGAGGCACCATTACGATAGAAATCGTGAATGGCACGCTTGGGCGCATGCGACCCTGCATGCTCAGTATGCTTCCGGAGGTACTGGAGCATTTACAGACACGACTTTGTCTATAGATCAGGGAGTAATTCGCGACGAAGACATAATTATTGATAGTGGTGGGACTAAGACAACGTGTCTTCTCATGTATCGAGATCCGACTCTTGCGTACATGGTTGTGGGTAACCTAACTAGTTCGACGGTGTATAAAGCCACGGCTAGTAAGTTACAGTGGGATAACGGAGGGGCACTTGCTGACGTTTCCAACGGAAACTATGGAGTGCATTTCGTATATCAGACCAACGACGTAAATAATCCGATCTACTCCGTACTAGGTCAGGCTCAGTATACGTCTTCCGCATTAGCCCAAGCTGCCGCAGTTCCGACTACTTTTCCTGCCTATCTCACGCGAGAGTGGAAGCTGCTATATATTGTCGTTTACAAGCAGCAGGGCGCTAATACGATTACCTTCGATAGCCAAGTAGATCTTAGGAGTAGTGTTAGTGGCGTAGGGGCTACAGGTGCAACTGGATTCCAAGGAAATCAGGGGATACAGGGGTCGCAAGGATTACAGGGTAATCAAGGAAATCAAGGATTAATCGGTGTTCAGGGTTTTCAAGGTAACCAAGGACAGCAGGGTAACCAAGGGAATCAAGGAAATCAGGGGCAACAGGGAAATCAAGGTACACAGGGCAATGTAGGCCTCCAAGGACAACAAGGAAACCAAGGCGTACAAGGTAACCAAGGGCAACAAGGGAATCAGGGCAATCAAGGAAATCAGGGTAATCAAGGAAGTCAGGGCAACCAGGGTCTTCAAGGTTGGCAAGGACTTCAAGGGCTACAGGGTCTTCAAGGAAACCAAGGACGTCAGGGAAATCAGGGTTCTCAAGGAAATCAGGGACAGCAAGGTCTACAGGGATTAGTCGGAACTCAAGGTCAGCAGGGAAATCAGGGACTACAGGGAAACCAAGGGGCACAAGGAATTCAAGGGTCTGGGGCCCAAGGTAGCCAGGGATATCAGGGTTCAGGCATACAAGGTTTTCAAGGAGTTTCTGCAAATGGGGCGCAGGGGTTACAGGGTCTGCAGGGACTTCAAGGTACAGGTACAAACGGGGTACAGGGCGTTCAGGGCCTACAAGGAACCAACCCAGGAGTACAAGGCAACCAGGGTTTACAGGGAAATCAAGGTGCTGGAGCTGCTTCTATAGATCCTCAAAGCGGCACCACATACACACTTGCTCTAGTTGACGCCAATAATATTGTAGCCTTTACAAACAGTGGGGCCATTGTCTGTACTGTTCCTACGAATGCAGTGGCAGCATTCTCTGTCGGGACTATTATAGTTATCGAACAGAGAGGGACTGGTACCGTTACTCTTTCTCCGTTTGATGGGTCCGTTACTATAAACGGTCAGTTAACTACTGCAGCTCAGTGGAAATCCGTAACTCTTATAAAGCAAGGTACCAATACTTGGGATTCGGTCGGTTCTGTAGGTCCTACTGGACCTCAGGGAATGCAAGGTTTTCAAGGAACGGGTACAAACGGAGTACAGGGAGTACAAGGACCACAAGGCTGTCAAGGTCTTCAAGGAGCAGGTACAAATGGGGCCCAAGGTATTCAGGGCTTACAGGGGACTAACCCCGGAGTACAAGGACCACAAGGCTGTCAAGGTCTTCAAGGAACTGGTACAGCTGGAGTACAAGGTATTCAGGGCTTACAGGGGACTAACCCTGGAGTACAAGGACCTCAGGGAATTCAAGGTCTTCAAGGAACAGGTACAAACGGAGTACAGGGCGTTCAGGGCCTACAAGGAACCAATCCTGGAGTACAGGGATACCAGGGTATCCAGGGTTCTGGGGCTGCTACGGTCAACACCCAAAGTGGGTCTCCCTACACGTTGGTATTGACGGATGCCAACAACATCGTTTACTTCACCTCTAATAGCGCTGTTAGTTGTGTTGTCCCTGCTAACGGAACTGTTGCAATTCCCGTAGGCAGCATAACACTGTTAGAGCAGGCGGGAACAGGTACTGTCACCGTCTCTCCTTTTGACGGGACAGTTACCGTTAATGGACAACTTACTACGGTCGGACAGTATACGGCCTTATCTTTGGTGAAGACGGCGACTAACGTATGGGACTCTCTAAGATCTGTAGGACCAACTGGACTTCAAGGGCTACAGGGTCTTCAAGGAAACCAAGGACGTCAGGGAAATCAGGGTTCTCAAGGAAACCAGGGTAACCAAGGCAATCAGGGTCTTCAAGGTAATCAAGGACGTCAGGGAAATCAGGGTTCTCAAGGAAATCAGGGACAGCAAGGGCTACAGGGTCTTCAAGGACAGCAAGGGCTACAGGGTCTTCAAGGTAATCAAGGACGCCAGGGAAATCAAGGACAGCAAGGTAACCAGGGAAATCAAGGACAGCAAGGTAACCAGGGAAATCAAGGACCGACAACGTCTCCAGAAGCCGGGTCTACTTACGCCCCTTCATCGGGATCTCAAACAGTTGCCCTGGATTGTGCGGGACATAACATCCATATTGTTACGGGTAATGCCAGCGGTACTGCCATAACGTTTACTGTTACCGGAGCTACAAACAATCAGGCATTTATTGTTTCAATCCTACAGGGGTCTACTGTCTCAACAATTGCTGGTTGGTTTGCTACAGTCAGATGGGCCGGTGGTGTAACTCCAACATTAACTGCTGTTGCAAACAAACGGGATACGTTCGGATTCATCAGAACTGGGACTAATACTTATGATGGGTTTATTGTTGGTCAGAACTGCTAG

Genome Context

Tertiary structure

PDB ID

7a82f3a77bbe69fbb4d433b511a3b81704cbfb67a3d2c1c05bec5ce7787a6cb8

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,4704

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence