Protein

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Genbank accession
XMR01488.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFVRMFDYGNEVQPLPGIKKIVARGLYCMVLLDSGDLYIRGQNLGSTFGNGSASNTIYTGDWVLSTTGIKNIWSNSGTTICTTFDNRVLSSGSIRGLTGSTASSTTTFTDRTTTFINAGLNPEQIVDVALNGYDIFALASSGEVYSGGINYSGQHGSTGARAFQLNTVYTNAKKISLSPEQTGTFWYLDTSNDFYGCGNGSVGQILGTKTVSSKKLISSDVIDFTANINCFFISKSDGLYCAGSQFNGQLGNGVKSNNIGEVGRTTLYKLPNFSTAPSYIFNDTYLTVVLYENKWYCTGSTGKSGAGINNNSSSFIVNNTIIPDNSNPRYAINNDNSYVVSNSGLLYGTGIYSSSTDLLPGYSTSQYEYVLLSTKGMNN
Physico‐chemical
properties
protein length:381 AA
molecular weight: 40863,86880 Da
isoelectric point:5,87075
aromaticity:0,11549
hydropathy:-0,16378

Domains

Domains [InterPro]
DC_0433
ATT
1–127
DC_0433 DC_1778
IPR009091
STR
9–269
IPR009091
IPR009091
STR
14–318
IPR009091
DC_1778
STR
110–217
DC_1778
XMR01488.1
1 381
Architecture
ATT
STR
ATT 1-127 | STR 128-329 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01488.1
1 381
Domain Start End Length (AA) Confidence
N-terminal 1 214 214 0,0975
Central domain 215 370 157 0,4340
C-terminal 371 381 10 0,9803
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-214
Central
215-370
C-terminal
371-381

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey3
[NCBI] 		3375710 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01488.1 [NCBI]
Genbank nucleotide accession
PQ471515 [NCBI]
CDS location
range 340135 -> 341280
strand -
CDS
ATGTTACCTTTTGTTAGAATGTTTGATTACGGAAATGAAGTGCAGCCATTGCCAGGTATTAAAAAGATTGTTGCACGAGGTTTATATTGTATGGTGCTACTTGATAGTGGGGATTTATACATAAGAGGTCAAAACTTAGGTAGTACGTTTGGTAATGGTTCAGCCAGTAATACTATATATACTGGTGATTGGGTTTTAAGTACAACTGGAATAAAAAATATATGGAGTAATTCAGGTACTACGATTTGTACAACATTTGACAACCGAGTTCTTTCAAGTGGATCTATTCGTGGCTTAACTGGAAGTACAGCATCATCAACTACCACATTCACTGACAGAACAACTACTTTTATTAATGCTGGTTTAAATCCAGAACAAATCGTTGATGTTGCTCTAAATGGATATGATATTTTCGCACTAGCGTCATCTGGAGAAGTTTACAGTGGAGGTATTAACTATTCAGGCCAACATGGTAGTACTGGAGCACGAGCATTCCAATTAAACACAGTATACACGAATGCCAAAAAAATTTCCCTAAGTCCAGAACAAACGGGTACTTTTTGGTATTTGGATACTTCAAATGATTTTTACGGGTGTGGAAATGGAAGTGTTGGTCAGATATTAGGAACTAAAACAGTGAGTTCAAAAAAATTAATAAGTTCTGATGTAATTGATTTTACTGCTAATATTAATTGTTTCTTTATTTCTAAATCTGATGGTTTATATTGTGCAGGTTCACAGTTTAATGGTCAACTTGGGAATGGAGTTAAAAGTAACAATATTGGTGAAGTAGGTAGAACAACTTTATATAAACTCCCAAATTTCTCGACAGCACCTAGTTACATTTTTAACGATACATACCTAACTGTTGTCCTTTATGAAAACAAATGGTATTGTACAGGTTCAACAGGCAAATCTGGAGCCGGAATTAATAATAATAGCAGTAGTTTTATTGTTAATAATACAATTATACCTGACAATTCAAATCCAAGATATGCAATTAATAATGACAATAGTTATGTTGTATCTAATTCTGGGTTATTATATGGTACAGGAATATATTCAAGCTCAACAGATCTATTACCAGGTTACTCAACATCACAATATGAATATGTGTTATTGAGTACTAAGGGTATGAATAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9318e364f825b604afa785c06752049c8af1a37d0c3183647b31b97191edd265
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8717
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank