Protein

View in Explore
Genbank accession
XCD29864.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,85
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MKENVITGSKGGSSKPYVPKEMADNLISINKIKVLLAVSDGECDPEFTLRNLYLDDVPVENSDGTKNYEGVTAEFRPGTQDQSYIQGFTDTASEITVAREITTSTPFVIPVTNKTLSAIRIKVMMPQGVKVEENGDRVGVEVVYRVDMAVDGGSYQEVLTDVLTGKTTSGYDRSRRIDLPAFNEQVLLRVVRVTHDSQTDRVVDKIRLQSYAEVIDAKFRYPLTGLVYVEFDSELFPSRMPNISVKKKWKLLNVPTNYDPISREYYGAWDGTWKKAWTNNPAFILYDIITNQRYGLDQRELGIPLDKWSIYEAAQYCDQKVPDGKGGTEPRYLCDVVIQSQIEAYQLVRDICSIFRGMSFWNGESLSIVIDKPREPSYVFTNDNVVNGDFNYTFASEKTMYTQCNVTFDDEQNMYQQDVEGVFEPEAALRFGFNSTSITAIGCTRRSEANRRGRWILKTNIKSTTVNFATGLEGMIPSIGDVVAISDNFWSSALKLNLSGRVMEVIGLQIFLPYKVDARPGDFIVVNKPDGKPVKRTIANVSADGKTIELNVGFGFDVQPDAVFAIDRTDIALQQYVVTTITKGDGDEEFAYSITAVEYDPNKYDEIDYGVNIDDRPTSVVQPDILQPPENVQVSSYSRVVQGMSIETMHISWDKVPYASLYEVQWRKDNSNWHNVPQTANKETEIEGIYAGTYYVRVRTVSSSGSASPWSKIVTATLTGKVGEPDKPINLTASDNEVFGIRVKWGMPEGSSDTAYIELQQSPNNDEQNASLLTLVPYPQREYWHSTLPAGQVVWYRVRSVDRIGNVSAWTDLVRGMASTDLDPILGDILEDIWNTEGGQEIKENAIDSANKIKDQAQSIIQNALANDSDVRVMRKENGKRKAEFKQSLQLIANETEARVTAITQLKAEVDTEIKGEITKINGEITRLDQAIADETSARVEAIEDLKAQVGDDIQGQITEVRQAVANETEARVSADQALTAKFGDVESALSQKLDSWAGVAGVGAQYSMKLGLTYNGQQYSAGMVMQLSQGASGLVSQVLFDAQRFGIMTSSVGGAYTLPFVVENNQVFINSLLVKNGSITNAMIGQFIQSNNYVWNQQGWRLDKGGTFENYGSTPGEGAMKMTNETISVRDQNGVLRVQIGRLTGVW
Physico‐chemical
properties
protein length:1148 AA
molecular weight: 127655,71710 Da
isoelectric point:4,80178
aromaticity:0,08798
hydropathy:-0,36132

Domains

Domains [InterPro]
DC_0014
STR
1–1148
DC_0014
IPR053171
Unmapped
3–876
IPR053171 IPR015406
IPR055385
ATT
92–217
IPR055385 IPR032876 IPR036116 IPR036116
IPR013783
STR
627–720
IPR013783 IPR013783
IPR003961
STR
628–701
IPR003961 IPR003961
IPR003961
STR
628–722
IPR003961
XCD29864.1
1 1148
Architecture
STR
ATT
STR
ATT
STR
STR 1-91 | ATT 92-217 | STR 218-340 | ATT 341-488 | STR 489-1148
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCD29864.1
1 1148
Domain Start End Length (AA) Confidence
N-terminal 1 509 509 0,9381
Central domain 510 1024 516 0,0277
C-terminal 1025 1148 123 0,3752
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-509
Central
510-1024
C-terminal
1025-1148

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PMBT35
[NCBI] 		3137287 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCD29864.1 [NCBI]
Genbank nucleotide accession
PP554580.1 [NCBI]
CDS location
range 6808 -> 10254
strand -
CDS
ATGAAAGAAAATGTGATAACGGGCAGTAAAGGCGGTTCATCAAAACCGTATGTGCCAAAGGAAATGGCTGATAACCTGATATCAATCAACAAGATTAAAGTTTTGCTGGCGGTGTCAGATGGTGAATGCGATCCAGAGTTTACCTTGCGAAATCTTTACCTGGACGACGTGCCAGTTGAGAACAGCGACGGAACGAAAAACTATGAAGGTGTAACCGCAGAGTTTCGACCAGGCACACAGGATCAGTCATATATTCAGGGTTTCACCGACACAGCGAGCGAAATCACAGTTGCGCGAGAAATAACCACATCAACGCCGTTTGTCATTCCAGTAACCAATAAAACCCTATCCGCGATCCGAATCAAAGTGATGATGCCGCAGGGTGTAAAGGTTGAGGAAAACGGAGACCGTGTAGGCGTTGAGGTTGTGTATCGCGTAGACATGGCGGTTGATGGAGGTAGCTATCAAGAAGTTTTGACGGATGTTCTGACGGGTAAAACAACGAGCGGCTACGACCGCAGCCGTCGAATTGACTTGCCAGCATTCAACGAGCAAGTTTTGTTGCGTGTGGTTCGAGTAACGCATGACAGCCAAACGGATCGCGTAGTTGATAAAATCAGGCTGCAAAGCTATGCGGAAGTTATCGACGCAAAATTTCGCTACCCATTAACGGGGCTTGTTTACGTGGAATTTGATTCCGAGCTTTTCCCAAGCCGGATGCCTAACATTTCCGTAAAAAAGAAATGGAAGTTGCTAAATGTTCCGACTAACTACGATCCTATTTCTCGTGAGTATTACGGCGCGTGGGATGGAACCTGGAAAAAGGCGTGGACAAACAACCCCGCTTTCATCCTGTACGACATTATCACAAACCAGCGTTACGGACTTGATCAGCGTGAATTGGGGATTCCACTGGATAAGTGGAGCATTTACGAGGCGGCGCAGTATTGCGATCAGAAGGTTCCAGACGGCAAAGGCGGAACAGAGCCGCGCTATCTTTGCGACGTTGTGATCCAAAGCCAGATTGAAGCATATCAGCTTGTGCGTGATATTTGCTCAATCTTCCGAGGCATGAGCTTTTGGAACGGTGAAAGCCTTTCGATTGTTATCGACAAGCCGCGCGAGCCGTCCTATGTGTTCACCAACGATAACGTTGTGAACGGTGATTTTAATTACACCTTTGCCAGCGAAAAAACGATGTACACGCAATGCAACGTGACATTCGACGACGAGCAAAACATGTATCAACAAGACGTTGAGGGTGTTTTTGAGCCGGAGGCGGCGTTACGTTTCGGGTTTAATTCAACCAGCATTACAGCGATTGGATGCACACGACGCAGTGAAGCAAATCGACGTGGGCGCTGGATTCTGAAAACCAACATCAAGAGCACAACGGTAAACTTTGCTACAGGTCTGGAGGGTATGATCCCGTCAATTGGTGACGTTGTGGCGATTTCGGATAACTTCTGGAGCAGCGCGTTAAAGCTAAACCTATCAGGGCGCGTAATGGAGGTTATCGGTCTGCAAATCTTCCTGCCTTACAAGGTTGACGCGCGGCCAGGTGATTTCATTGTCGTGAACAAGCCGGATGGTAAGCCAGTAAAGCGCACCATTGCAAACGTGAGCGCAGACGGCAAAACGATAGAGCTAAACGTGGGTTTCGGCTTTGACGTTCAGCCTGACGCAGTTTTTGCGATTGACCGCACCGATATTGCATTGCAGCAATACGTTGTAACCACGATCACGAAAGGCGACGGTGACGAGGAGTTTGCTTACTCAATCACGGCGGTAGAGTACGATCCGAATAAGTACGACGAGATTGATTATGGCGTGAACATCGACGACCGCCCAACAAGCGTTGTGCAGCCGGATATTTTGCAGCCACCGGAAAACGTCCAGGTTTCGTCTTACTCTCGTGTTGTGCAGGGAATGAGCATTGAAACGATGCACATTAGTTGGGACAAAGTGCCTTACGCGAGCTTATACGAGGTTCAATGGCGCAAGGATAATAGCAACTGGCACAACGTACCGCAGACGGCAAACAAAGAAACGGAGATAGAGGGGATTTACGCTGGAACGTATTACGTGCGAGTACGCACAGTTTCCTCGTCTGGTTCCGCCTCGCCGTGGTCTAAGATCGTAACTGCGACGTTGACGGGCAAGGTTGGCGAGCCGGACAAGCCGATCAACTTAACAGCCAGTGATAACGAGGTGTTTGGTATTCGCGTTAAATGGGGGATGCCGGAGGGTTCAAGCGATACGGCGTACATCGAATTGCAGCAATCGCCAAACAACGACGAGCAAAACGCCAGCCTGTTAACTCTTGTTCCATACCCGCAGCGCGAGTATTGGCACAGCACGTTACCAGCGGGGCAGGTTGTTTGGTATCGCGTGCGAAGTGTTGACCGTATCGGCAACGTTTCCGCATGGACTGATCTGGTGCGCGGCATGGCCTCAACCGATCTTGATCCTATCCTGGGCGATATCTTAGAGGATATCTGGAACACGGAAGGGGGGCAGGAAATCAAGGAAAACGCCATTGACAGCGCGAACAAAATCAAAGACCAAGCGCAAAGCATCATTCAAAACGCATTGGCTAATGATTCAGATGTGCGGGTTATGAGGAAGGAAAACGGGAAGCGTAAAGCCGAGTTTAAACAATCCTTGCAACTTATCGCCAATGAAACAGAGGCGCGGGTTACGGCAATCACCCAGCTAAAAGCGGAGGTTGACACGGAAATCAAAGGTGAAATCACCAAGATTAACGGAGAAATCACGCGATTGGATCAGGCGATTGCAGACGAGACAAGCGCACGAGTTGAAGCGATTGAAGATCTGAAAGCGCAGGTTGGCGACGATATCCAGGGGCAGATAACGGAAGTTCGTCAAGCCGTGGCAAATGAAACAGAGGCACGAGTTAGCGCAGACCAGGCATTAACCGCTAAGTTTGGCGATGTTGAATCAGCACTTTCGCAGAAACTTGATTCATGGGCTGGCGTTGCTGGCGTAGGCGCTCAATACTCAATGAAATTAGGCTTAACGTACAACGGGCAGCAGTATAGCGCGGGAATGGTTATGCAGTTGTCACAGGGCGCTAGCGGCCTTGTTTCACAGGTGCTTTTTGATGCGCAGCGGTTCGGTATTATGACAAGTTCAGTTGGCGGCGCTTATACGCTTCCGTTTGTGGTCGAAAACAACCAGGTATTCATTAACAGCTTGTTAGTGAAAAACGGTTCGATTACTAACGCGATGATTGGTCAATTCATCCAATCAAACAACTATGTTTGGAACCAGCAAGGATGGAGACTAGACAAGGGCGGTACTTTCGAGAACTACGGTTCAACGCCTGGCGAGGGTGCTATGAAAATGACTAACGAAACAATCAGCGTTAGGGATCAGAATGGAGTGTTGCGCGTTCAGATTGGACGATTAACAGGCGTGTGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
07414df04942989347b62ab3f546fd2e2db59da4b7a0b8701441d74094145473
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7850
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
This phage originates from the Bacteriophage catalogue of the Bacteriophage Competence Centre, Department of Microbiology und Biotechnology, Max Rubner-Institut, Kiel, Germany Sprotte,S. and Brinks,E. 2020-12-18 — GenBank