Protein

View in Explore
Genbank accession
XKC18923.1 [GenBank]
Protein name
minor tail protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MALLPSDIPTGLVTGEFHFVNEDSVDFDTDPDLLVVTGTVTFTASVPKLTHATKAATIIPMAFDAEFNSNGLLVPKGRLTEPGIELPATNSSLLSPLNYTWKVEFNLKEAATGFSVVIPSFDISVPWGGTVDLTTASPVDTSPGVLTVQGPQGIQGPAGPAGPSGDAAYVQQIPRIASYLKREEKLQDYQTKLANAENVQCNIVAMGDSITEGTGASNVVNRWQTVMQTELRYRHGALTGATFPWIPTWPRTSAPGMPVTRSGNVTVDINRGIGWKAGIINTDGAVTFSFTGTSFKLIVLKGSTTGVMDVSIDGGAVQSYNTNSITGGGSDAAYKWDSGPLTRGEHTARVTWNASSPTNYGIYLFGCLTYDGDETNGIRVLDGGYHGSNSSLYTSAQLTQLGANINSIGNVGLVISAVGTNDYGQSTPIATFKERLELFVSTLRGVGYTGSIAFCGVYKGLTSGVARDDALWTSYLDQMRQVAATDSKVAFFDWRLRMPDVPEPYNASASLGLYADGLHPSDAGHKYIAGFMTDYLSDRYI
Physico‐chemical
properties
protein length:541 AA
molecular weight: 57568,77270 Da
isoelectric point:4,90193
aromaticity:0,09427
hydropathy:-0,08651

Domains

Domains [InterPro]
DC_1109
ATT
1–242
DC_1109 G3DSA:2.60.120.260 IPR036514
G3DSA:1.20.5.320
STR
142–193
G3DSA:1.20.5.320 G3DSA:2.60.120.260 IPR013830
Coil
Unmapped
179–199
Coil cd00229
SSF52266
STR
183–246
SSF52266 SSF52266
IPR051532
Unmapped
380–539
IPR051532
XKC18923.1
1 541
Architecture
ATT
STR
ATT 1-246 | STR 280-539 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC18923.1
1 541
Domain Start End Length (AA) Confidence
N-terminal 1 222 222 0,8047
Central domain 223 421 200 0,3281
C-terminal 422 541 119 0,4268
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-222
Central
223-421
C-terminal
422-541

Taxonomy

  Name Taxonomy ID Lineage
Phage Arthrobacter phage Amavida
[NCBI] 		3367555 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC18923.1 [NCBI]
Genbank nucleotide accession
PQ244017 [NCBI]
CDS location
range 5088 -> 6713
strand +
CDS
ATGGCACTTTTGCCTTCTGATATTCCTACCGGGCTTGTGACAGGTGAGTTCCACTTTGTCAATGAGGATTCGGTGGATTTTGACACCGATCCGGACCTGCTTGTAGTTACTGGCACAGTGACATTCACTGCCTCGGTGCCTAAGCTGACACACGCTACAAAGGCCGCTACAATCATTCCGATGGCCTTTGATGCCGAGTTCAACTCAAATGGCCTGTTGGTACCCAAGGGGCGCTTGACTGAACCGGGTATTGAGCTTCCAGCTACGAACTCTTCGCTGCTGTCGCCGCTAAACTATACGTGGAAAGTAGAGTTCAACCTCAAAGAGGCTGCTACCGGCTTTAGCGTAGTAATCCCGAGCTTCGATATAAGCGTCCCATGGGGCGGTACCGTAGACCTCACGACGGCCTCCCCTGTGGATACCTCCCCCGGTGTGCTGACTGTTCAGGGGCCTCAGGGTATCCAAGGCCCTGCCGGTCCTGCTGGCCCTTCTGGGGACGCGGCCTACGTCCAGCAGATTCCGCGCATAGCAAGCTACTTGAAGCGGGAAGAGAAGCTACAGGACTACCAGACGAAGCTCGCGAATGCGGAAAATGTACAGTGCAACATCGTGGCTATGGGAGACTCCATCACCGAGGGTACTGGGGCTAGTAATGTCGTCAACAGGTGGCAGACGGTCATGCAGACCGAGCTCCGCTATCGCCACGGTGCGCTGACAGGGGCTACGTTCCCTTGGATTCCTACTTGGCCTCGCACAAGCGCTCCCGGTATGCCTGTAACCCGCTCTGGCAACGTGACAGTGGATATCAACCGTGGCATCGGTTGGAAGGCCGGGATTATCAACACTGACGGTGCTGTGACGTTCTCCTTTACCGGCACCAGCTTCAAGCTGATTGTGCTGAAAGGCTCCACAACTGGTGTTATGGATGTGTCCATAGATGGTGGGGCGGTGCAGAGCTACAACACAAACAGCATTACAGGTGGTGGCTCTGATGCCGCGTACAAGTGGGACTCTGGTCCGCTGACTCGTGGGGAGCACACCGCTCGCGTTACATGGAATGCCAGTTCCCCAACCAACTACGGAATCTACCTGTTCGGATGCCTTACATACGACGGTGACGAGACAAACGGAATCCGTGTGCTGGATGGTGGATACCATGGCTCCAACTCAAGCCTATACACGTCAGCACAGTTGACTCAGCTTGGGGCCAACATCAATTCCATTGGAAATGTTGGTCTGGTCATCTCTGCGGTGGGTACAAACGACTACGGCCAGTCAACTCCCATAGCGACGTTCAAGGAACGTTTGGAATTGTTTGTGTCTACGTTGCGTGGAGTAGGTTACACCGGCTCAATAGCATTCTGTGGTGTCTACAAGGGGCTTACCAGTGGTGTCGCTAGGGACGATGCCCTGTGGACCTCTTACCTTGACCAGATGCGTCAGGTAGCGGCTACAGACAGCAAGGTAGCCTTCTTCGACTGGCGTCTGAGAATGCCCGATGTTCCTGAGCCTTACAACGCTTCTGCGAGTCTGGGCCTGTACGCTGACGGGCTGCATCCTAGTGATGCGGGGCACAAGTACATTGCGGGATTCATGACAGACTATTTATCTGACCGCTATATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f4f524f8a90d179f43e6810907894a799f04dd45c9a88d4dc57194058e1bba8f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8185
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50