Protein

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UniProt accession
A0A8S5VM09 [UniProt]
Protein name
Pulmonary surfactant-associated protein D, c-type lectin, alpha-helical coiled
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,92
Protein sequence
MPDTPGLSTADMQKKMDEIPREVIIPVLNALIDGLNGMDLDKRTHNGGGCLYIRVNSDRVVETSDDGNSWQATGSSGHLIIDETGNEMPQRNRMQFLGATVTDTGLYTVIQARKGDPGQQGPQGPVGPQGPQGVQGPIGPAGPQGAQGLRGATGDPGPAGPAGATGPTGPKGEKGEKGSDGSSFVVKGLYATLSALKAAHPTGVAGDAYAVGTADNNVVYLWDVDKRAWVSVGTLQGPQGPTGPQGPQGPTGSVGPQGPTGPQGETGPQGKQGVQGEPGEKGEQGIQGLRGEQGPTGPQGPQGEKGDPGLVQSVNGKSGKAIVLTAEDVGALDESTAKELINSQTSGKMAASTYDPQGRQTDIFKAIDKVSNIYYARLTLNGWTACSSADQAKDLLYQQTATLTCANSHAPVVTAASEFLSGIGYDKTGVPATDNVLDEVQDIINDGVTVTAYNSVLVKVKKKPTAEIRARWVIQS
Physico‐chemical
properties
protein length:476 AA
molecular weight: 48894,66590 Da
isoelectric point:4,99662
aromaticity:0,04202
hydropathy:-0,49916

Domains

Domains [InterPro]
DC_0575
ATT
1–120
DC_0575 IPR008160 IPR008160 DC_1739
IPR050149
Unmapped
113–311
IPR050149
IPR008160
STR
121–176
IPR008160 G3DSA:1.20.5.320
DC_1065
STR
164–282
DC_1065
G3DSA:1.20.5.320
STR
279–335
G3DSA:1.20.5.320
A0A8S5VM09
1 476
Architecture
ATT
STR
RBD
ATT 1-120 | STR 121-335 | RBD 336-460 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Ackermannviridae sp
[NCBI] 		2831612 Uroviricota > Caudoviricetes > Pantevenvirales >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DAG92016.1 [NCBI]
Genbank nucleotide accession
BK035299 [NCBI]
CDS location
range 17247 -> 18677
strand +
CDS
ATGCCAGATACGCCCGGTTTAAGCACAGCTGACATGCAGAAAAAAATGGATGAAATCCCGCGTGAAGTCATTATCCCTGTTTTAAATGCCCTGATTGACGGGCTGAACGGGATGGATTTGGATAAAAGAACCCATAACGGCGGCGGCTGCCTTTATATCCGTGTAAACAGCGACCGCGTTGTTGAAACGAGCGATGACGGCAATTCCTGGCAGGCGACAGGTAGCAGCGGTCACTTAATCATTGACGAGACCGGCAATGAAATGCCGCAGCGAAACCGCATGCAGTTTTTGGGGGCCACCGTTACCGATACGGGGCTTTACACGGTTATTCAAGCGCGAAAAGGCGACCCAGGGCAGCAAGGCCCCCAGGGGCCTGTAGGACCGCAAGGCCCGCAGGGTGTACAGGGGCCTATTGGACCGGCAGGCCCACAGGGCGCGCAAGGCTTACGCGGTGCAACGGGCGACCCCGGCCCAGCAGGCCCGGCAGGCGCAACAGGTCCTACCGGGCCGAAAGGAGAAAAAGGCGAAAAGGGAAGCGACGGTTCCAGCTTTGTTGTGAAAGGCTTGTATGCCACGCTCTCCGCACTGAAAGCTGCACACCCAACCGGCGTGGCTGGAGACGCTTACGCGGTTGGAACGGCTGACAACAACGTTGTGTATTTGTGGGACGTTGACAAGAGAGCATGGGTATCTGTTGGAACGCTGCAAGGCCCGCAAGGCCCTACTGGCCCGCAGGGACCGCAGGGGCCTACCGGCTCTGTTGGGCCGCAGGGACCTACCGGCCCGCAGGGTGAAACTGGCCCGCAGGGCAAACAGGGCGTACAGGGTGAGCCTGGCGAAAAAGGTGAGCAGGGAATCCAGGGTTTGCGCGGTGAGCAAGGCCCTACCGGCCCGCAGGGGCCGCAGGGCGAAAAGGGAGACCCCGGACTTGTACAGAGCGTAAACGGTAAAAGCGGCAAAGCAATTGTGCTGACCGCAGAAGATGTTGGCGCGTTGGATGAGAGCACAGCAAAAGAACTTATCAACAGCCAAACGTCCGGGAAAATGGCGGCAAGCACCTATGACCCGCAGGGGCGGCAGACCGATATTTTTAAGGCAATCGACAAGGTCTCCAACATCTACTACGCCAGGCTTACGCTGAACGGGTGGACGGCCTGCAGCAGCGCCGACCAGGCCAAAGACCTGCTGTACCAGCAGACGGCTACGCTGACCTGCGCAAACAGCCATGCGCCGGTTGTGACGGCTGCCAGCGAGTTTTTGTCCGGCATCGGCTACGACAAGACCGGGGTGCCCGCTACCGATAATGTGCTGGATGAAGTGCAGGACATCATCAACGACGGCGTGACGGTCACGGCGTACAATTCGGTGCTGGTTAAGGTGAAAAAAAAGCCCACCGCCGAAATCCGGGCGCGGTGGGTCATTCAAAGTTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0031012 extracellular matrix Cellular Component IEA:TreeGrafter (UniProt)
GO:0005615 extracellular space Cellular Component IEA:TreeGrafter (UniProt)
GO:0030020 extracellular matrix structural constituent conferring tensile strength Molecular Function IEA:TreeGrafter (UniProt)
GO:0030198 extracellular matrix organization Biological Process IEA:TreeGrafter (UniProt)

Tertiary structure

PDB ID
2eb01c53ccf303549a9ea94a53269e8872352a86ba5a095b887eaa8a5c01e009
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6508
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50