Protein

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Genbank accession
XDC48635.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MANEVGTANNLEDLFGKIISFLTTNATLVAANQEWEALRLRRDNLLSHTSNLNEPSSGANSRYMQHTFRYDPRSINTNNPMANGWEGHFYANNWSAGVSHNTWRLRQAREVKTVRIKAAVGTSYVNAAPKSFRLQYSDDNSSWTTALTVTDTAVFVLGETRDFAVPGTPGAHEYWRILWDKTQSSTTTGNIAWTELLLLQADETVANHFGSEAILKAPGNSGTEAIYTGIRAEYDATAGWYNLFLNGYTGYDPNVQSWFLQPGAIPGYGATFTKANPMVPCWDAAMPYWFSASGRSFRFGVKVSTNYEGGYLGFILPYATPGQYPYPLAVGGSLVPNESNRSANWRYSFASYEHGVFPGPGANSGWESESVWATMYVRDPGGDWRHFANRPNRNGSAIDGIQGYSFQYSLPFAVTGGNRSIWPHCENGKWTSGRRPYRECLGGGYIMQSCVLLQRNPSWMVFGELEGVYAISGYQNSAENTTTYNGKTHVIFQNAYRNTVHEFWAMSLD
Physico‐chemical
properties
protein length:509 AA
molecular weight: 56681,06800 Da
isoelectric point:6,42772
aromaticity:0,14145
hydropathy:-0,45010

Domains

Domains [InterPro]
DC_0072
STR
1–205
DC_0072
G3DSA:2.60.120.260
STR
49–198
G3DSA:2.60.120.260
IPR008979
STR
84–156
IPR008979 DC_0072
XDC48635.1
1 509
Architecture
STR
STR 1-509
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XDC48635.1
1 509
Domain Start End Length (AA) Confidence
N-terminal 1 40 40 0,1851
Central domain 41 248 209 0,5986
C-terminal 249 509 260 0,9371
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-40
Central
41-248
C-terminal
249-509

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Baskent_P4_1
[NCBI] 		3236750 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDC48635.1 [NCBI]
Genbank nucleotide accession
PP992516 [NCBI]
CDS location
range 20808 -> 22337
strand +
CDS
ATGGCGAACGAAGTCGGTACCGCAAACAACCTCGAGGATTTGTTCGGGAAGATCATCTCTTTCCTGACGACCAATGCCACGCTTGTAGCGGCGAACCAGGAGTGGGAGGCTCTCCGGCTTCGCCGGGATAATCTGCTTTCTCATACCTCGAACCTCAATGAGCCATCGAGCGGGGCCAACTCCCGCTACATGCAGCACACCTTCCGCTACGATCCACGGAGTATCAACACCAACAACCCGATGGCCAATGGCTGGGAGGGCCACTTCTACGCAAATAACTGGTCCGCTGGAGTCAGCCACAACACCTGGCGCCTTCGACAAGCCCGAGAAGTGAAGACTGTCCGGATTAAGGCGGCCGTTGGTACCTCCTATGTGAATGCGGCCCCGAAGTCTTTCCGTCTTCAATACTCGGACGATAATAGCTCTTGGACCACAGCCCTCACTGTGACCGACACCGCCGTCTTTGTCCTCGGGGAGACCCGGGACTTCGCTGTGCCGGGGACCCCTGGAGCCCACGAGTATTGGCGTATCCTTTGGGACAAGACACAGAGTAGCACCACTACCGGTAATATTGCTTGGACGGAACTGCTCCTGCTCCAAGCCGACGAGACGGTCGCCAACCACTTTGGTAGTGAGGCGATACTCAAGGCCCCCGGGAACTCTGGAACGGAGGCGATCTACACTGGCATCCGAGCGGAGTACGACGCCACCGCTGGCTGGTACAACTTGTTTCTGAATGGCTACACTGGGTACGACCCCAATGTCCAATCGTGGTTTCTTCAACCGGGGGCTATCCCCGGCTATGGCGCCACCTTTACTAAGGCCAACCCGATGGTACCCTGCTGGGATGCCGCGATGCCTTACTGGTTTAGCGCCTCTGGCCGGTCATTTCGCTTCGGGGTCAAGGTGTCCACCAACTACGAGGGCGGCTACCTTGGCTTCATCCTTCCTTACGCAACGCCCGGGCAGTACCCTTATCCGCTCGCCGTGGGTGGGTCTCTAGTCCCAAACGAAAGCAACCGCTCGGCCAACTGGCGCTACTCCTTCGCCTCTTATGAGCATGGTGTGTTCCCCGGGCCGGGGGCGAACTCCGGTTGGGAGTCGGAGAGCGTCTGGGCGACGATGTATGTTCGCGATCCGGGCGGGGACTGGAGACACTTCGCCAACCGACCGAACCGCAACGGTAGCGCCATTGATGGTATCCAAGGTTACTCATTCCAGTACTCTCTCCCGTTCGCGGTGACCGGCGGGAACCGGTCTATCTGGCCTCACTGCGAGAACGGGAAGTGGACCTCCGGACGGCGCCCGTACCGGGAGTGCCTTGGTGGGGGCTACATTATGCAGTCATGTGTGCTACTCCAACGCAACCCCTCGTGGATGGTTTTCGGCGAGCTGGAGGGGGTCTACGCCATCAGTGGTTACCAGAACAGCGCCGAGAACACCACCACCTACAACGGGAAGACCCACGTGATCTTCCAGAACGCTTACCGCAACACCGTCCACGAGTTCTGGGCGATGTCGCTTGACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b0c61812ec2242bb30820b0c719aec1b96dd5cd0a6ead3e9adb16d9c6d134362
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6567
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50