Protein

View in Explore
Genbank accession
AAL25902.1 [GenBank]
Protein name
Sb24
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQEEVCTVIEAAGIPLSKGEHTQLHAAIGRLIDEQVKTRLEKNQNGADIPNKPLFLQNVGLGETINLAAGALQKSQNGGDIPDKKQFARTIGAVTSTTITLGESGWFKIATVVMPQATSTAVIKLYGGAGFNAGSPEQAAISELVLRAGNGSPVGITATLWRRSPSAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLHSTPEYSSVQPGNSTSGQTYTLFNSLMKPTAGDVEALSVNGGRLNGPLGIGTDNALGGNSIVFGDNDTGFKWHSDGVLGIYANNALVGYIDNSGLHMSVDVLTNGAVRAGNAKKLSLTSNNNSTMTATFNLWGDANRPTVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSLWGNGWLSTWINNNLVLDVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDYQGENIDGINYAPLQKRVGSQWYTVQGGTV
Physico‐chemical
properties
protein length:520 AA
molecular weight: 55363,57810 Da
isoelectric point:5,05170
aromaticity:0,08462
hydropathy:-0,30596

Domains

Domains [InterPro]
DC_2005
STR
105–397
DC_2005 G3DSA:6.20.70.20
IPR051934
Unmapped
293–518
IPR051934
DC_0801
RBD
449–517
DC_0801
AAL25902.1
1 520
Architecture
STR
RBD
STR 105-397 | RBD 424-517 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage ST64B
[NCBI] 		175950 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAL25902.1 [NCBI]
Genbank nucleotide accession
AY055382 [NCBI]
CDS location
range 16918 -> 18480
strand +
CDS
ATGCACAGAATTGATACGCCCACCGCGCAAAAAGATAAATTTGGTCAGGGAAAAAACGGATTTACGAATGGTGATCCCGCCACGGGCCGCCGCGCAACGGATCTCAACAGTGATATGTGGGATGCAGTCCAGGAAGAGGTCTGTACTGTTATTGAAGCCGCCGGCATACCACTCAGTAAAGGCGAACATACGCAGCTTCACGCCGCCATTGGCAGGCTGATCGATGAACAGGTTAAAACCCGTCTTGAAAAAAATCAGAATGGCGCGGACATCCCGAATAAGCCGCTGTTTCTCCAGAACGTCGGTTTAGGAGAAACGATAAATCTCGCTGCAGGGGCCCTGCAAAAATCGCAGAACGGCGGCGATATTCCTGACAAAAAACAATTTGCGAGAACCATCGGTGCGGTAACGTCAACCACCATTACACTTGGCGAATCAGGCTGGTTCAAAATCGCCACGGTTGTAATGCCGCAGGCTACATCAACTGCGGTGATTAAACTGTACGGTGGGGCGGGGTTTAACGCTGGTTCACCTGAACAGGCGGCAATCAGCGAACTGGTATTGCGTGCCGGTAATGGTTCACCTGTTGGAATAACCGCCACATTATGGAGGCGTTCACCTTCTGCTGCTAACGAGGTCGCATGGGTTAATACATCAGGCGACACCTACGATATTTATATTAATATCGGCCAGTATGCGTACTGGTTAATTGCGCAATATGATTACACCGGTAATGCAAATGTCACGCTGCACAGTACGCCTGAATATTCATCAGTTCAGCCGGGAAACTCAACCAGCGGTCAGACATATACACTGTTTAATAGTCTGATGAAACCCACAGCCGGTGACGTTGAGGCACTGTCAGTTAATGGAGGGAGGCTAAACGGTCCGTTAGGCATTGGTACTGATAATGCGCTGGGTGGTAATTCGATTGTATTCGGAGATAACGATACAGGGTTTAAGTGGCACAGTGACGGCGTTCTGGGGATTTATGCCAATAATGCTCTGGTTGGTTATATCGACAATTCCGGGCTGCACATGTCAGTAGATGTTCTCACTAATGGTGCCGTACGCGCAGGCAACGCAAAAAAACTGTCACTGACGAGCAATAATAATTCGACAATGACAGCCACGTTTAATTTATGGGGCGACGCAAACAGGCCAACAGTTATTGAACTGGACGACGATCAGGGATGGCATCTGTACAGCCAGCGAAATCCTGACGGTTCGATTGTCTTTACGGTCAATGGAGATATCACCGCTAACACGCTTCGTGCAGGCGGGGCTATCTATCAGAATAACGGCGACATCTTTGGTTCGCTATGGGGAAATGGCTGGTTAAGTACCTGGATTAATAATAATCTCGTCTTAGATGTTCAGTTAGGGGCTGGCACATCAGTGACTACCTGGAACAATGCAGGTTCCTGGCCTAACACTCCCGGATATGTAGTTACCTCCGTCTGGAAAGATTATCAGGGCGAAAATATTGATGGTATTAATTATGCGCCTTTGCAAAAACGAGTCGGGAGTCAGTGGTATACCGTACAAGGGGGAACGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
889fd83d703fec1185c261baa3c8b87f1b7c58e67463116fa9c973bada634d6f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7562
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage ST64B, a genetic mosaic of genes from diverse sources isolated from Salmonella enterica serovar typhimurium DT 64 Mmolawa,P.T., Schmieger,H. and Heuzenroeder,M.W. 2003 14563886 GenBank
Genetic characterization of Salmonella enterica serovar Typhimurium bacteriophage ST64B Mmolawa,P.T., Thomas,C.J. and Heuzenroeder,M.W. 2003-11 — GenBank